Yersinia ruckeri Big Creek 74 (serotype O2): UGYR_09270
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Entry
UGYR_09270 CDS
T03887
Symbol
uvrD
Name
(GenBank) DNA-dependent helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
yrb
Yersinia ruckeri Big Creek 74 (serotype O2)
Pathway
yrb03420
Nucleotide excision repair
yrb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
yrb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
UGYR_09270 (uvrD)
03430 Mismatch repair
UGYR_09270 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yrb03400
]
UGYR_09270 (uvrD)
Enzymes [BR:
yrb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
UGYR_09270 (uvrD)
DNA repair and recombination proteins [BR:
yrb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
UGYR_09270 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
UGYR_09270 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
AAA_22
PhoH
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AKA38568
UniProt:
A0A085U6G1
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All DBs
Position
complement(2042016..2044178)
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AA seq
720 aa
AA seq
DB search
MDVSDLLDSLNEKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIAV
TFTNKAAAEMRHRIEHLIGTSQGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQH
RLLKRIVKALNLDEKQWPPRQAMWYINGKKDEGLRPQHIESYGNPVEATWLRIYQAYQEA
CDRAGLVDFAELLLRAHELWLNKPHILNHYRERFTNILVDEFQDTNSIQYAWIRLLAGER
SNVMIVGDDDQSIYGWRGAQVENIQRFLKDFPGAETIRLEQNYRSTSTILKAANTLIANN
DGRMGKNLWTEGAEGEPISIYCAFNELDEARFVVNRIKAWQDHGGALNDCAILYRSNAQS
RVLEEALLQTSMPYRIYGGQRFFERQEIKDSLAYLRLISNRNDDAAFERVVNTPTRGIGD
RTLDVVRHTARDRQFTLWQATRELLQSQVLAGRAASALQRFVELVDSLAHETADMPLHVQ
TDRVIRDSGLWIMYEQEKGEKGQARIENLEELVNATRQYSYQDEDEDLMPLQAFLSHAAL
EAGEGQADAYQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAY
VGLTRAMQKLTLCYAESRRLYGKEVNHRPSRFIGELPQECIEEVRLRASVTRAVNHRRMG
TPMNENDSGFSLGQRVRHPKFGEGTVVNLEGSGEHSRLQVAFPGEGIKWLVAAYARLEAV
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttctgatctgctcgacagcctgaatgaaaaacaacgcgaagccgtggccgct
ccacgcagcaacctgttggtactggccggtgcgggcagtggtaaaacccgggtgctggtg
catcgtattgcctggctgctctctgtggaaaatgcttcgccgtattccattattgctgtg
acttttaccaataaggcggcggcagaaatgcgccatcggattgagcatctgattggtacc
agccaaggcggtatgtggatcggaaccttccacggtttggcacaccgtttgctgcgcgct
catcatttggatgccaatctgccgcaggattttcaaatcctcgacagcgacgaccagcac
cgcttactgaaacgtattgttaaggcactgaatcttgatgagaaacagtggccaccgcgt
caggcgatgtggtacatcaacggtaaaaaagacgaaggcctgcggcctcaacacattgaa
agttatggtaacccggttgaggcgacctggctgcgtatttatcaggcctatcaagaggcc
tgcgatcgtgccggtttggtggattttgccgagttattgctgcgcgcccatgagctttgg
ctgaataaaccgcatattttgaaccactatcgtgaacgctttaccaacattctggttgat
gagttccaagataccaacagcatccagtacgcgtggattcgcctgctggcgggtgaacgt
tccaatgtgatgatcgtgggcgatgatgatcagtcaatctatggctggcgtggtgcgcag
gttgagaatattcaacgcttcctgaaggattttcccggtgcggaaaccatccgtctggag
cagaactatcgttcgaccagtaccatcctgaaggccgccaataccctgattgccaacaat
gatggccggatggggaaaaatttgtggactgaaggtgctgaaggtgagccgatctcgatt
tattgtgcgtttaacgagctggatgaagcgcgctttgtggttaaccggattaaagcctgg
caggatcacggtggggcactcaatgattgcgccattttgtaccgcagtaacgcccaatcc
cgcgtgttggaagaggctttgctgcaaacttcaatgccgtatcgtatttatggtggtcaa
cgcttcttcgaacggcaggagatcaaagactctctggcttatctgcgcttgatttcgaac
cgcaatgacgatgcggcttttgagcgggtagtgaatacgccgacccgcggcattggcgat
cggacattggatgtggtgcgccacactgcacgggatcgtcagtttaccttgtggcaggcg
actcgcgagttattgcaaagccaagtactggcggggcgtgcggcttctgccttacagcgt
tttgttgaactggtggattcactggctcacgaaaccgctgatatgccattacatgtgcaa
accgatcgggtcattcgtgattccgggctgtggatcatgtatgaacaggaaaaaggcgaa
aaaggccaggctcgtattgagaaccttgaggaattggtcaacgcgacgcgtcagtacagc
tatcaggatgaagatgaagacttgatgccattgcaggcgttcttgtctcacgcagcgctg
gaggctggcgagggccaggctgatgcctatcaggatgcggtgcaattgatgacgttgcac
tcggccaaagggttggaattcccacaggtatttattgtcggtatggaagagggtatgttt
ccgagccagatgtcgctggatgaaggtggacgtttggaggaagagcgccgtctggcttat
gtcggcttaactcgcgcaatgcaaaaattgactctctgctatgcagaaagtcgccgtttg
tacggtaaagaagtgaatcatcgtccttctcgttttatcggcgaattgccgcaggaatgt
attgaagaggtaagactacgcgctagcgtgacgcgtgcggtcaatcatcgccggatggga
acaccaatgaatgagaacgatagcggcttctcgttggggcagcgggttcgtcatcctaaa
ttcggtgaaggtacggtggtgaatctggaaggcagtggtgagcatagccgcttacaggtt
gcctttcccggtgaagggatcaagtggctggtggcggcctatgcgcggctcgaagctgtg
taa
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