Yersinia ruckeri Big Creek 74 (serotype O2): UGYR_09290
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Entry
UGYR_09290 CDS
T03887
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
yrb
Yersinia ruckeri Big Creek 74 (serotype O2)
Pathway
yrb00300
Lysine biosynthesis
yrb00470
D-Amino acid metabolism
yrb01100
Metabolic pathways
yrb01110
Biosynthesis of secondary metabolites
yrb01120
Microbial metabolism in diverse environments
yrb01230
Biosynthesis of amino acids
Module
yrb_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
yrb00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
UGYR_09290 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
UGYR_09290 (dapF)
Enzymes [BR:
yrb01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
UGYR_09290 (dapF)
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Paralog
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Motif
Pfam:
DAP_epimerase
PhzC-PhzF
CntK_N
Motif
Other DBs
NCBI-ProteinID:
AKA38572
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All DBs
Position
complement(2046619..2047443)
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AA seq
274 aa
AA seq
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MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY
RIFNADGSEVSQCGNGARCFARFVRIKGLTNKRDIRVSTQTGRMVLSVTDDEMVSVNMGE
PNFEPQAIPFKAIKAEKTYILRAAEHTVLCGVVSMGNPHCVLQVDDVSAANVELLGPELE
NHERFPERANIGFMQVVSRQHIRLRVYERGAGETQACGSGACAAVAVGIQQALLDEDVHV
ELPGGSLDISWKGPGQPLYMTGPATHVYDGFIHL
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgcagttctccaaaatgcacggtcttggcaatgattttatggttgtcgatgctgtcaca
cagaatgtttatttctcgccggagcttatccgtcgactggcagaccggcacactggcgtg
ggttttgatcagatgctggtagttgaaccaccctatgatccggagttggatttccactac
cgtatttttaatgccgatggcagcgaagtttcccaatgtggcaatggtgcccgctgcttt
gcccgctttgtacgaattaaggggctgaccaataagcgagatattcgggtcagcacacag
actgggcgtatggtactgagcgtaacggatgatgagatggtgagcgtcaatatgggcgaa
cccaactttgagccgcaggccattccatttaaagcgataaaagcggaaaagacctatatc
ttacgcgccgctgagcacacagtgctgtgcggtgtagtttcgatgggcaatccccactgt
gttttgcaggtggatgatgtttcggccgctaacgttgagttgctggggccagaattagaa
aatcatgaacgttttcccgagcgtgccaatattggttttatgcaggtagtgagccgacaa
cacatccgtttgcgggtctacgaacgtggtgcgggggaaacccaggcctgcggtagtggt
gcctgtgcggccgtcgcggtcggtattcaacaagcgctgttggacgaagatgttcatgta
gagttgccgggtggtagcctggatatcagttggaaaggacccggccaaccgttgtatatg
accgggcctgcaacccacgtctacgatggttttattcatttataa
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