Yersinia ruckeri Big Creek 74 (serotype O2): UGYR_09420
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Entry
UGYR_09420 CDS
T03887
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
yrb
Yersinia ruckeri Big Creek 74 (serotype O2)
Pathway
yrb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yrb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UGYR_09420 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yrb03021
]
UGYR_09420 (rho)
03019 Messenger RNA biogenesis [BR:
yrb03019
]
UGYR_09420 (rho)
Transcription machinery [BR:
yrb03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
UGYR_09420 (rho)
Messenger RNA biogenesis [BR:
yrb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
UGYR_09420 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
AAA_22
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AKA38593
UniProt:
A0A085U6D5
LinkDB
All DBs
Position
complement(2071546..2072805)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSDLITLGENMGLENLARLRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIATSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLARKIAEKRVFPAIDY
NRSGTRKEELLTTTEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMRRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggtttctgacctgattacacttggcgaaaat
atggggctggaaaacctggcccggttgcgtaagcaagacatcatcttctctattcttaag
caacacgctaaaagtggagaagatatcttcggtgacggtgtattggagatattgcaggat
ggatttggtttcctccgttcagcagacagctcctacctcgccggtcccgacgacatctat
gtatctccaagccaaattcgccgtttcaacctccgcactggtgacaccatttccggtaag
attcgtccgccgaaagaaggtgagcgttattttgcactgttaaaagttaacgaagttaac
tacgacaaaccggaaaatgcccgtaacaagattctatttgaaaacttgactccgttacat
gcgaactctcgtttgcgtatggaacgcggtaatggttcaacggaagatttgacggcgcgc
gtactggatctggcttcgccaattggtcgcggacaacgtggtttgatcgtcgcaccgcca
aaagcgggtaagaccatgctgctgcagaatatcgcaaccagcattgcctacaatcacccc
gattgcgtattgatggtgttgctgatcgatgaacgtccggaagaagtgactgagatgcaa
cgtctggttaaaggtgaagtcattgcttcaacctttgatgagccagcttctcgccacgtt
caggtcgccgaaatggtcattgagaaagcgaagcgtctggttgagcataaaaaagacgtt
atcatcctgttggactccattacacgtctggctcgtgcctataacaccgtcgttccggcc
tcaggtaaggttctgaccggtggtgtggacgcgaatgccctgcatcgtcctaagcgtttc
ttcggtgcagcacgtaatgtggaagaaggcggaagcctgaccatcatcgctaccgcgctg
gttgataccggttcgaagatggatgaagtgatttacgaagagtttaaaggtacgggtaac
atggaattgcatctggcacgtaaaattgctgagaaacgtgtattccctgctatcgattat
aaccgttcaggtacccgtaaagaagagttgctcaccacgaccgaagaattacaaaaaatg
tggatcttgcgcaaaattatccacccaatgggtgagattgatgcgatggaattcctcatt
aataaactggccatgactaagacgaacgacgaattctttgatatgatgagacgctcgtaa
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