Yersinia ruckeri Big Creek 74 (serotype O2): UGYR_09855
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Entry
UGYR_09855 CDS
T03887
Symbol
rfaD
Name
(GenBank) ADP-L-glycero-D-manno-heptose-6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
yrb
Yersinia ruckeri Big Creek 74 (serotype O2)
Pathway
yrb00541
Biosynthesis of various nucleotide sugars
yrb01100
Metabolic pathways
yrb01250
Biosynthesis of nucleotide sugars
Module
yrb_M00064
ADP-LDmanHep biosynthesis, sedoheptulose-7P => ADP-LDmanHep
Brite
KEGG Orthology (KO) [BR:
yrb00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
UGYR_09855 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
yrb01005
]
UGYR_09855 (rfaD)
Enzymes [BR:
yrb01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
UGYR_09855 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
yrb01005
]
Core region
UGYR_09855 (rfaD)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
NAD_binding_4
Polysacc_synt_2
adh_short
KR
Motif
Other DBs
NCBI-ProteinID:
AKA38669
UniProt:
A0A085U3Q1
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All DBs
Position
2173840..2174772
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AA seq
310 aa
AA seq
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MIIVTGGAGFIGSNIVKALNDIGYKDILVVDNLKDGTKFVNLVDLDIADYMDKEDFVASI
VAGDDMGDIDAIFHEGACSSTTEWDGKYMMDNNYQYSKDILHFCLDRRIPFLYASSAATY
GGRTDNFIEDRQYEQPLNVYGYSKFLFDQYVREILPQADSQICGFRYFNVYGPREGHKGS
MASVAFHLNNQINAGENPKLFSGSENFKRDFIYVGDVAALNLWFWQNGVSGIFNCGTGRA
ESFQAVADAVVEYHNSGPVEYIPFPEKLKGRYQAFTQADLTNLRAAGYDKPFKTVAEGVK
EYLAWLNRPI
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgattatcgtcactggcggcgccggttttattggcagcaatatcgttaaggcactgaat
gatataggatataaagatatcctagtggtggataacctgaaagatggtaccaagttcgtc
aatctggtcgatctggatattgccgattacatggataaagaagattttgtcgccagtatt
gttgccggtgatgatatgggcgatatcgatgctatcttccatgaaggcgcttgctcctcc
accaccgagtgggatggcaagtacatgatggataacaactatcagtactccaaagacatc
ttgcacttctgtctggatcgtcgtattccgttcctgtatgcctcttcggcagccacctac
ggtggtcgtaccgataactttattgaagaccgccagtacgaacagccgctaaatgtttat
ggttactccaaattcctgttcgatcaatatgtgcgtgaaatcctgccgcaggctgactcg
caaatttgtggcttccgttacttcaacgtatacgggccgcgtgaaggccataaaggcagc
atggctagcgtcgctttccacctgaacaatcaaatcaatgccggcgaaaatcctaaactg
ttctccggcagtgaaaactttaaacgcgacttcatctatgttggcgacgtggcggcactc
aatctttggttctggcaaaatggcgtttccggtatattcaactgtggaaccggtcgtgcc
gaatctttccaggctgtcgctgatgccgtggtggaataccacaacagcggccctgtggaa
tacatcccattcccggaaaaattaaaaggtcgttaccaggcattcactcaagccgatctc
accaacctacgcgcagccggttatgacaaaccgtttaaaaccgtcgcagaaggtgtgaaa
gagtatctggcctggttaaatcgcccgatttag
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