Yersinia ruckeri Big Creek 74 (serotype O2): UGYR_10085
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Entry
UGYR_10085 CDS
T03887
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
yrb
Yersinia ruckeri Big Creek 74 (serotype O2)
Pathway
yrb03030
DNA replication
yrb03410
Base excision repair
yrb03420
Nucleotide excision repair
yrb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
yrb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
UGYR_10085
03410 Base excision repair
UGYR_10085
03420 Nucleotide excision repair
UGYR_10085
03440 Homologous recombination
UGYR_10085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yrb03032
]
UGYR_10085
03400 DNA repair and recombination proteins [BR:
yrb03400
]
UGYR_10085
Enzymes [BR:
yrb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
UGYR_10085
DNA replication proteins [BR:
yrb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
UGYR_10085
DNA repair and recombination proteins [BR:
yrb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
UGYR_10085
NER (nucleotide excision repair)
GGR (global genome repair) factors
UGYR_10085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH
SCP2
Prok-E2_E
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AKA38711
LinkDB
All DBs
Position
complement(2223208..2226012)
Genome browser
AA seq
934 aa
AA seq
DB search
MAQIAENPLILVDGSSYLYRAYHAFPPLTNASGEPTGAMYGVLNMLRSLLLQYHPSHVAV
VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLAVSGVEADDVIGT
LAQEAEKAGYSVLISTGDKDMAQLVTPNITLINTMNNTILGPEEVREKFGVPPELIIDFL
ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYSNLDKIASLTFRGAKTLSAKLEQNK
DVAYLSYQLATIKTDVELEVSCGELIVSTPDIDQLHTLFARYEFKRWLVDLEGGKWLEGN
KARPTGTGKSDNKASDIVVATPTAEVSALLSQENYQTILDEETFLIWIERLKQAEVFAFD
TETDGLDTLSANLIGLSFAVAPGEAAYLPVAHDYLDAPAQLDRSWVLTTLKPLLEDEQAL
KVGQNLKFDKSLLARYGIELRGIAFDTMLESYVLNSVAGRHDMDSLSERYLNHKTITFEE
IAGKGKNQLTFNQIALEQASPYAAEDADVTLQLHLAMWPKLQESEDLLRVFQQIEMPLLP
ILSRIERTGVLIDQSILATHSQELTIRLTELEKQAHELAEEPFNLASPKQLQAILYEKQK
LPILKKTPGGAASTNEEVLAELALDYPLPKVLLEYRGLAKLKSTYTDKLPLMINPISGRV
HTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPAGYCILAADYSQIELRIMA
HLSQDKGLLAAFAEGKDIHRATAAEVFGLPLENVTTEQRRSAKAINFGLIYGMSAFGLAR
QLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNANR
RKAAEREAINAPMQGTAADIIKRAMIAVDAWLQQQAEPLVRVIMQVHDELVFEVHESVVE
SATQTICDLMEQSMQLDVPLKVEVGVGKNWDQAH
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaatcgcagaaaaccccttgatattggttgatggttcctcctacctctaccgc
gcttaccatgctttcccgccgctgactaacgccagtggagagccgaccggagcgatgtac
ggtgtgttgaatatgcttcgcagcctgttgttacagtatcatccaagccatgttgcagtt
gtctttgatgccaaaggaaaaaccttccgcgacgaactctttgctgaatataaatcccat
cgcccaccgatgcctgatgatctgcgtgcacagatagaaccactgcatcaaatggtgaaa
gccatgggtttaccgttgctagctgtatctggcgtcgaggctgatgacgtcattggtact
ttggcgcaggaggccgaaaaagcgggttactccgtattgatcagtactggtgataaagat
atggcgcagttagtgacgccaaatatcactctgataaatacgatgaataacactattctt
ggtccagaggaagtgcgagagaagtttggtgttccacctgagttgattatcgattttctg
gctttgatgggggattcatccgataacattcccggcgttcccggcgtgggagaaaaaaca
gcgcaggcactgctgcaaggcttgggcggcttggatacgttgtacagcaatctggataag
atcgcttcgctgaccttccgtggtgcgaaaaccctgtctgccaagctggaacagaataag
gatgtcgcctacctctcttatcagttggcgacgatcaagactgacgttgagctagaggtg
agttgtggcgaattgatcgtgtctacacctgacatcgatcaactgcatacgctgtttgct
cgttatgaatttaagcgctggctagttgatttagaaggtggtaaatggctcgaaggcaat
aaagctcgtccaacgggcaccggtaagagtgataataaggcttctgatattgtggttgcg
acacctaccgcagaagtgagcgctttactctcgcaagagaactatcaaaccattctggat
gaagagacatttttaatctggatagaacgtctgaaacaggccgaggtgtttgcttttgat
actgaaaccgatggcttggatacattaagtgccaatcttatcggcttatcatttgctgtt
gcgcctggggaagccgcttatttgccggtagcgcatgattatcttgatgcacctgcacag
cttgatagaagttgggtattgaccacgctcaaaccgttgctagaagatgaacaggctctt
aaagtcgggcagaacctgaagttcgataagagcctattagctcgttatggtatagaactg
cgtggcattgcctttgatactatgctggaatcctacgtactaaacagtgttgctggccgt
catgatatggacagtctctctgagcgctacctcaatcataaaaccattacttttgaagag
attgcaggaaaaggtaagaatcagttaacctttaaccaaattgctttggagcaggcatcg
ccttatgcggcggaagatgccgatgttacgttgcagttacatttggcgatgtggccaaaa
ctccaggaaagcgaagacttgttgcgggtattccagcagattgaaatgccgttactgccc
attctttctcgaattgaacgcaccggcgttctaattgaccaatctattctggcgacccac
tcgcaagagctgacgatacgtttgaccgagttggaaaaacaagcccatgaattggcggaa
gaaccgtttaatctggcctctcctaaacagctacaggcgattctgtatgaaaaacagaaa
ctgccaatcctgaaaaaaacgcctggtggcgcagcgtcaacgaatgaagaagtcttggct
gaactggcgttggattatccattgccgaaagtgcttcttgagtatcgtggactggccaag
ctaaaaagcacctataccgataaattgcctttgatgattaatccgatttccgggcgggtg
catacttcataccatcaggcagtaacggctacgggtagattgtcatcccgtgatcctaac
ctacaaaacattccggtcagaaatgaggaagggcgtcgtattcgtcaggcatttattgct
ccggcgggttactgcattcttgctgccgattactctcaaattgagctgcgtattatggcg
catttatcgcaagataaagggttgctagccgcttttgccgagggtaaagacattcaccgt
gcaacggctgcggaagtctttggtttgccgttagagaatgtcacgaccgagcagcgtcgc
agcgccaaagcgattaacttcggcctgatttatggcatgagtgcttttggtctggctcgt
cagttgaatattcctcgtggcgaagcccaacgttatatggatctttatttcgagcgttat
ccgggcgtcttggaatatatggagcggacgcgcaagcaagcggcagatcaaggctatgtt
acgactctggatggtcgtcgactctatttgccagatattcactctcgtaacgccaaccga
cgcaaagctgcggagcgtgaagcgattaacgcacccatgcagggtaccgctgccgatatt
atcaaacgggcaatgattgccgttgacgcttggttacagcaacaggctgaacctttggtt
cgggtgatcatgcaggtacacgatgaattggtgtttgaagtacatgaaagtgttgtggaa
tctgcgacacagacgatttgcgatctgatggaacaaagtatgcagttggatgtgccgctg
aaagttgaagtcggtgtgggaaaaaattgggatcaggctcactaa
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