Yersinia ruckeri Big Creek 74 (serotype O2): UGYR_12095
Help
Entry
UGYR_12095 CDS
T03887
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
yrb
Yersinia ruckeri Big Creek 74 (serotype O2)
Pathway
yrb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yrb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UGYR_12095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yrb03019
]
UGYR_12095
03009 Ribosome biogenesis [BR:
yrb03009
]
UGYR_12095
Enzymes [BR:
yrb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
UGYR_12095
Messenger RNA biogenesis [BR:
yrb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
UGYR_12095
Ribosome biogenesis [BR:
yrb03009
]
Prokaryotic type
rRNA helicases
UGYR_12095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
DRTGG
Cas3-like_C_2
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
AKA39062
LinkDB
All DBs
Position
2665769..2667739
Genome browser
AA seq
656 aa
AA seq
DB search
MTTELETSFADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAA
FGLPLLHNIDPTLKAPQVLVLAPTRELAVQVAEALSSFSKHISGVNVVALYGGQRYDVQL
RALRQGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPA
EHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSNTTRPDISQSYWKVGGGYRKNEALVR
FLESEDFDAAIIFVRTKNATLEVAETLERSGYSSAALNGDMNQSLREQTLERLRDGRLDI
LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQ
NIERTMKLTIPEVMLPNAELLGERRLAKFAAKVSQQLESSDLDVYRGLLTKLQPEDEFDI
EALAAALLKMAQGERPLILPPEPVRRPQREFSPREDRGNDRGDRRERRPESRDGAERPAR
RERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM
PGDMLSHFTRTRILNKPLNMQLLGDAQPHERRERAPGAAAGAGAERRGGGRSFGGERREG
GNGAPRRSFGGERREGGNGGERRPAGNRDGQRSAAPRREDAAAPAAAPARRRFGDA
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgactactgagcttgaaacctcttttgctgatctggggctgtccgctcctattctttcc
gcccttactgatctgggttatgaaaaaccatccccaattcagttggaatgtattccacac
ctgttgaacggccgtgatgttctcggcatggcgcaaaccggtagtggcaaaacagctgct
ttcgggcttccgctgttgcacaacattgatccaactctgaaagcaccacaggtgctggta
ctggctccgactcgtgagctggctgttcaggttgcggaagcattatctagcttctctaaa
cacataagtggcgttaacgtggtggccttgtacggcggccagcgttatgacgttcaatta
cgcgctttgcgccaggggccacaagttgttgtcggcaccccaggtcgtctgttagaccac
ctgaaacgcggtacccttaacttgtccaacctgagcggtttagtgttggatgaagcagat
gaaatgctgcgcatgggctttatcgaagacgtagaaaccatcatggcgcagatcccggct
gaacatcagaccgcgctgttctctgcaactatgccagaagcgattcgtcgtattacccgt
cgctttatgaaagatccgcaggaagtacgcattcagtctagcaatacaactcgtccagac
atcagtcagagttattggaaagttggcggtggttaccgtaaaaacgaagcgctggtacgt
ttcttggaatctgaagatttcgatgcggcaatcattttcgtgcgtaccaaaaatgcaacg
ctggaagtggctgaaactctggagcgtagtggctacagcagcgcagcactgaatggtgac
atgaaccagtccctgcgtgagcagactctggagcgtttacgcgatggtcgcctggatatt
ctgattgcaactgacgtggctgctcgtggtctggatgttgagcgtatcagcttggttgta
aactatgatatccctatggattcagagtcttatgttcaccgtatcggccgtactggccgt
gctggtcgtgctggtcgcgcattgctgttcgttgagaaccgtgaacgtcgcctgttgcag
aacatcgaacgcaccatgaagctgaccattcctgaagtgatgttgccaaacgcagaattg
ctgggcgaacgtcgtctggctaaatttgcggctaaagtcagccaacaactggaaagcagc
gatctggatgtataccgtggtctgttgactaaactgcaaccagaagatgagttcgatatt
gaagctctggccgcagcgttactgaaaatggcacagggcgaacgtcctctgattctgcca
ccagaaccagtacgtcgtccgcagcgtgagttcagcccgcgtgaagaccgtggcaacgat
cgtggtgatcgccgtgagcgtcgtcctgaaagccgtgatggtgccgagcgcccagcacgt
cgcgaacgtcgtgacgtaggtgaaatggaactgtaccgtattgaagtgggtcgtgatgac
ggtgttgaagttcgtcatatcgttggcgctatcgctaacgagggtgatatcagcagccgt
tacatcggtaacattaagctgtttgcttctcactctactattgagctgccgaaaggtatg
ccgggcgatatgctgtctcatttcacccgcacccgtatcctgaacaagccgctgaacatg
cagctgttgggtgatgcgcagccacacgaacgtcgtgaacgtgctccaggtgcagctgct
ggcgcaggcgcggaacgtcgtggcggtggtcgttcattcggtggcgaacgtcgtgaaggc
ggcaacggtgctccacgtcgttcattcggtggtgagcgtcgtgaaggtggtaatggtggc
gaacgtcgtccagcgggcaaccgtgacggtcagcgttcagctgcaccacgtcgtgaagat
gctgccgctccggccgcagcacctgctcgtcgtcgtttcggtgacgcgtaa
DBGET
integrated database retrieval system
