Yersinia ruckeri Big Creek 74 (serotype O2): UGYR_12285
Help
Entry
UGYR_12285 CDS
T03887
Name
(GenBank) DEAD/DEAH box helicase
KO
K06877
DEAD/DEAH box helicase domain-containing protein
Organism
yrb
Yersinia ruckeri Big Creek 74 (serotype O2)
Brite
KEGG Orthology (KO) [BR:
yrb00001
]
09190 Not Included in Pathway or Brite
09194 Poorly characterized
99996 General function prediction only
UGYR_12285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
MZB
ResIII
Motif
Other DBs
NCBI-ProteinID:
AKA39096
LinkDB
All DBs
Position
complement(2710693..2717013)
Genome browser
AA seq
2106 aa
AA seq
DB search
MTTRYFSSLIEQSLSRSTEATLSIMGVTNPQLREHLALQMRADCGKAGSFLASPVFEQTF
GWEESKYTMKMLATEKTLLSKKVIDSLDSEQNGRYRFGANWKPFTHQLASWESLLEKKHS
VVVTSGTGSGKTECFMVPVLEDLYRELRDSGNQPLVGVRALFLYPLNALINSQRERLDAW
TRGFSSGIRYCLYNGNTEELHASVKSEQANKPNEVLSREKMREEPAPILVTNGTMLEYMM
VRQVDAPIIQQSKAEKSLRWIVLDEAHTYVGSQAAELALQLRRVMTAFGVTPDDVRFVAT
SATIAGSDAEKQLKKFLSELSGVPQERIDVLGGNRVIPELDACKNYPVTLDELEHIPDSG
NEGISFERYSALTHSPEARYLREMLVSQPRPVKLDVMTKRLNELTKNHYTQQEILRWIDL
CTGTSSNAQDPAFLKVRAHIFQRNTQGIWACADKHCSAKHNTVLEKNWPFGYVYVNQRQN
CHCGSPVFELAFCNECNEPHLLAKDKKGKLVQWDNKGGDEFSLHDDIPDDFETSGEKVQK
EHVFQAPQIIAPECNTEAGYIIQRLDRNTRSIGVVHKDAIPLAINENEQICSASNCGYKG
GKGQSPFRRALLGGPFYVTNIVPTVLEYCQDFANDEGKEGVGPLSLPGRGRRLITFTDSR
QGTARMAVRMQQEAERSRLRGSVVELLSWHQRKQAVNTPNALADVTKLVEMAKQARDEAK
NLRDWGMPEEAILSEEKAERIEQAIQKTTGGKVNIVLTSLTWQEMINELKDKADIKGSIL
QYNHYLKPEIFTENSGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKLHKTPV
HWHEQGLTLDDWRDFLKVTLDFYVRENNFIQLDLELKNWIGSRFSSKFVRNPESKDPDDN
QVKRWPQIRHGNVTHRLVKLLILGAKFSTVNTVTIDIVNAWLKEAWLELTGPLAVLKPDG
NRFYLPKEHLTFSLIQKASICPVTNKLLDTTFKGLTPYLPRHIQFERLTNTQYSAYMAQE
VILPEVWEHDHSQLDYVEGLAQTREWVSQDPLVAHLRSQNVWTDINDRVVEGGFYYRTAE
HSAQQSADRLQSYEKMFKNGQLNVLNCSTTMEMGVDIGGISAVIMNNVPPHPANYLQRAG
RAGRSKESRAISYTLCKGNPHDQQVFANPLWPFETVIPAPMVAMNSERLVQRHVNSLLLS
EYLCHVVGETKKEKTNLNSAWFFGEEFGQSVCNSFKIWLERPALIIDDALERLVKGTALN
AARPEFLREKTFHAITGLQKRWQGIFHDLVKQEHESQPNTPYRKRLQLEKKRHCDEYLLR
DLAARTFLPGYGFPTDVVNFDNFTMEDYVREKTHKSRNKSDREDNVSRYKGLPSRNLSVA
IREYAPGAEIILDGRVFRSAGVSLHWHNLNADTNEAQRLDRAWRCQKCGTLGYEEGIGSS
VELFCTNSDCGERITRDNTRQVLQPAGFVTDAYDPVTNNIETMKFIPVVPAWVFVKAERL
PLPNPEMGFMASGANGHVFQQSMGEGGHGYALCLSCGRAESMISEKDALKSMEAHYPPRP
GKADRDSQNQRIICPGSTALNTKVTLGALARTDVFELILRRPQDGEYIPDSSDEGRIVAM
TLAVALRRALAGVLGVSAAELGYAVRPVRLESEESVLAVQLYDVISGGAGFASSAPLHIE
TILQGMVKQLGCTHCDTACSDCLLDSQTRHDHDHLDRKAALAWLGDDFSHYIGLPDEEKF
SLPDAQYCPGTIEDAVRRAINEGADKLTLWMNGPLNEWDLYARQFRAAIQNYRVKDNVAV
ELVIPAGVDDPEVLHELAQFAAIGVRLCHAEQEMSFPIVAQIAFADRVITLASRSQQATV
PGPHWHQNDELVVRSQSYRPAALRGFELPATTVNYSELVKDIQIHKELNGPFSQFGQRFW
DVLSNGHEKAQNLMKTNRITHIHYTDRYLQNPVALALLSALLKPLKTLMTKDAEVVIDTL
FKNKDRPGNRPSHDWMSEADFQDFADQWFAASMGKAADITVFDYSRDIPHHRKLMVNFDN
GQVLKIRFDQGMGYWRIDFPYVWRSFDFNDDVTSQLHKMAKACMEGKVINGEENWSTDVV
VEVMEP
NT seq
6321 nt
NT seq
+upstream
nt +downstream
nt
atgactacacgctacttttcttcactcattgaacaatcactctctcgctcaacagaagca
acgcttagcatcatgggtgttacgaatcctcagctcagagaacatcttgcccttcaaatg
agggcagattgtggcaaagcaggttctttccttgcgtctccagtatttgaacagacattt
ggctgggaagaatcaaaatacaccatgaaaatgctggcaacggagaaaacattgcttagc
aaaaaggtaattgactctctggatagtgaacaaaatggccgctatcgctttggcgctaac
tggaaaccgtttacccaccagttggctagctgggaatcattactcgagaaaaaacattcg
gttgttgttaccagcgggacaggttcaggtaaaacagaatgcttcatggtgccagtactc
gaggatctttatcgtgaattacgcgatagcggcaatcaaccgctagtgggagtaagagca
ttattcctctacccacttaatgctctgattaattcgcagcgtgaacgcctggatgcatgg
actcgtggatttagttcagggattcggtactgcctatataacggcaacacagaagaattg
catgcctcggtaaaaagcgagcaggcaaacaagcctaatgaagttttatcacgtgagaaa
atgcgagaagagccagcaccaatactagtgacgaacggtaccatgctggaatacatgatg
gttcgtcaggttgatgctccaataattcagcaatcgaaagcagaaaaatcattacgctgg
atagttctggatgaagcgcatacctatgtagggtctcaagcagccgagcttgccctacaa
cttcgtcgtgtaatgactgctttcggtgtcacgcctgatgatgttcgttttgttgcaacg
tcagcaaccattgcaggaagtgacgcagaaaagcagctaaaaaaattcttatcggaactg
tcaggagtaccacaggaacgtattgatgttttgggaggcaatcgtgttattccagaactt
gatgcatgcaaaaattatcccgtcacacttgatgagcttgagcatataccagactcaggt
aacgaaggaattagctttgagcgttatagtgcattaacacactcaccggaagcacgctat
ttacgagagatgctggttagccaaccacgcccagtgaaacttgatgtaatgacgaaacgc
ttaaacgagctgacaaagaatcattacacgcaacaagaaattttacgctggatagatctc
tgtacaggcacaagttcaaacgcacaagatccggctttccttaaagtaagagcgcatatt
ttccaacgtaatacccaagggatatgggcctgcgcagataagcattgttcagcgaagcac
aacacggtactggaaaaaaactggccttttggttacgtgtatgtgaatcagcgacaaaat
tgccattgtggtagccctgtttttgagcttgcgttctgtaatgagtgcaacgaaccgcac
ctgttggcgaaggataaaaaaggtaagctcgtacagtgggacaataaaggtggggatgaa
ttctcgctgcatgatgacatcccagatgactttgaaacatcgggggagaaagttcaaaaa
gaacatgtattccaggctccgcaaattattgcgccggaatgcaatactgaggccggatat
ataatccagcggctcgatcgtaatacccgcagcattggcgttgttcataaagacgccatc
cctctggcaattaacgaaaacgaacagatttgcagcgccagcaattgtggctataaaggc
gggaaaggtcagtccccctttagacgcgctttgctgggaggtcctttttatgtcacgaat
attgtgcccacggtgttggaatactgccaggatttcgccaatgatgaaggtaaagagggc
gtaggcccactatcattgccggggcgaggacgacgactaattacctttaccgatagccgc
cagggaacggcacggatggcagtaaggatgcagcaagaagctgagcgtagtcgtttgcgc
ggtagtgtggtggagttactttcctggcatcagagaaaacaggctgtaaatactcctaat
gcactggccgatgtaacgaaactggttgagatggctaaacaagccagagatgaggcgaaa
aacctgcgtgactggggtatgccggaagaggcaattctctcagaagaaaaagcagaacgt
attgaacaggctatacaaaaaacaacaggtggaaaagttaatatcgttttaacttcgctg
acctggcaggagatgattaatgagcttaaagataaggcagatatcaaaggctctattctg
cagtacaaccactatcttaaacctgagatttttactgagaacagtggacctctgaagctt
tcagagatgcttctatttcgtgaatttatgcgtcgaccgaaacgaaccaacagccttgaa
acacaaggactggtacaggttggctaccaagggttggagaagctacataaaacccctgtt
cactggcatgaacaagggcttactctggatgattggcgtgattttctaaaagtcacactg
gatttttatgtcagagaaaacaacttcattcaactggatttagaactgaagaactggatt
ggcagccgtttctcttcgaaatttgtacgcaaccctgaatcaaaagaccctgacgataac
caagtcaaacgttggccccaaattcgtcatggcaatgttacccatcgcttggttaagcta
ctaatactcggggcaaaattcagcaccgtaaacactgttaccatcgatatagttaacgca
tggttgaaagaagcctggctcgaattaaccggccctctggctgtgttaaaaccagacggt
aaccgtttttacttgcctaaagaacatctgacattctccttgattcaaaaggcgagtatt
tgccctgttaccaataaattattggataccactttcaaaggactcactccttacttaccc
agacatatacagtttgaacgcctgacaaatacgcaatatagcgcctatatggcacaggaa
gtaatactacctgaagtctgggaacacgatcattcacagttggattatgtcgaagggttg
gcacaaacccgggaatgggtatcacaagatccgctagtagctcatttacgctcgcaaaac
gtctggacggatattaacgaccgcgtagtggagggaggcttttactatcgtactgctgag
cattcagcacagcaatcagcggatcgtctgcaaagctacgaaaagatgtttaaaaacggg
cagcttaacgtccttaactgttccaccaccatggaaatgggcgtggacattggcggtatt
tccgccgtaataatgaataacgtccctcctcatcctgcaaactatttacagcgtgcgggg
cgggccggacgtagtaaagaatcccgcgcaatctcctacacgctgtgtaaaggaaaccct
cacgatcagcaggttttcgccaatcctctctggccatttgagaccgtgattccagcaccg
atggtggcaatgaactcagaacgattggtacaacgccacgttaattcgctactactttca
gaatacttgtgccatgtggtgggagaaactaagaaagagaaaaccaatctgaatagcgcg
tggttctttggtgaagagtttgggcagtctgtatgtaacagctttaagatttggcttgaa
cgccccgccctgataattgatgacgcgcttgagcgtctggtaaagggtaccgcgttaaat
gctgcaagaccggaatttttgcgggaaaagactttccatgcgattactggcttacaaaaa
cgttggcaggggattttccacgatctcgtgaaacaagaacatgaatcacagccaaatact
ccgtatcgtaagcgcctgcaactggagaaaaaacggcattgtgatgaatacctattgcgc
gaccttgcagcgcgaaccttcctgcctggctatggtttcccgacggatgttgtgaacttt
gataacttcaccatggaagactatgtccgcgagaaaacgcataaaagccgtaataagagc
gaccgtgaagataacgtttcacgttataaaggactgccttcacgcaacctgtctgttgcc
attcgtgaatatgccccaggagctgagatcattctggacggacgtgtgttccgttcagct
ggcgtatcactgcactggcacaatctcaatgctgataccaatgaagcccaacggttggac
cgcgcctggcgttgccagaaatgcggtacgttaggctatgaagaaggtattggtagctct
gtagaattattctgtaccaacagcgactgtggtgagcgaattactcgtgacaacactcgt
caagtgctgcagccagccgggtttgtcacagatgcttatgacccggtaacgaataacatt
gaaacgatgaagtttatcccggtagttccggcatgggtatttgttaaggcggagcgtttg
ccactgccaaacccagagatgggttttatggcttcaggcgctaatggtcatgtattccaa
cagagtatgggcgaaggtggacatggttatgcactgtgtctgagctgcggccgcgcagag
tcgatgataagcgaaaaagacgcgctaaaatcaatggaggcgcattatccgccacgtcca
ggaaaagcagaccgtgacagccaaaatcagcgaattatttgccctggatctaccgcgtta
aataccaaagtcacccttggagcgttagcacgtaccgatgtatttgaactgattttacgt
cgtccacaagacggtgagtatattccagatagttcagatgaagggcgtattgttgctatg
acgctggccgttgcgcttcgtcgggcgcttgcgggtgtactgggtgtttctgctgccgag
ctgggctatgcggtgcgcccggtcaggctggagagtgaggaatcagtactggcagttcag
ctttacgacgtcattagcggcggtgcggggtttgcttccagtgcaccattgcatattgaa
acgatactgcagggaatggtcaaacagctagggtgcacccactgcgataccgcctgtagc
gattgtttactcgattcgcagacgcgtcacgatcatgaccatctggatcgcaaagccgca
ctggcctggctgggggatgatttcagccactatattggtttgccagacgaggagaagttc
tcgctgcccgatgcgcagtattgccccggtaccatcgaggatgcagtccgtcgcgcaatt
aacgaaggggccgataaacttacgctgtggatgaatgggccgctcaacgagtgggattta
tatgcccgacagttccgcgcggcaatccagaactaccgggtcaaagacaatgtcgcggtt
gagcttgtcattcccgctggtgttgacgatccggaggtgttgcacgaactggcgcagttt
gcggctatcggcgtgcggttgtgccatgccgaacaggaaatgtcattccccattgtggcg
caaatcgctttcgccgatcgtgtcataacgctagcatcacgcagccagcaagccacggtg
ccggggccgcactggcatcagaatgacgagctggtggttcgcagccaatcctatcgccct
gctgctctgcgtgggtttgaactaccagccacgacagtgaactatagtgagctggtgaaa
gacattcaaattcataaagagttgaatggcccgttttcgcagtttggtcaacgcttctgg
gatgtgctttctaacggccatgaaaaagcacaaaacctgatgaagacaaatcggattacc
catattcactataccgatcgctatctgcaaaacccggttgcgctggcgctgctgagtgct
ttacttaagccgctgaaaaccttaatgaccaaggatgcggaagtggtgattgatacctta
ttcaaaaacaaagatcgtccaggaaatcggccgtcccacgactggatgagtgaagctgat
ttccaggattttgctgatcagtggtttgccgcatcaatgggtaaggcggctgacataacg
gtgttcgactactcacgagatattccacatcatcgtaaattgatggtgaactttgataat
ggccaggtgctgaagatccgctttgatcaggggatgggctactggcgtatcgacttccca
tatgtctggcgcagctttgacttcaatgatgatgttacttctcagctccacaaaatggcg
aaagcttgtatggaaggaaaagtgattaacggagaggaaaactggtcaacggatgtggta
gttgaagtgatggaaccttaa
DBGET
integrated database retrieval system
