Yersinia ruckeri Big Creek 74 (serotype O2): UGYR_13400
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Entry
UGYR_13400 CDS
T03887
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
yrb
Yersinia ruckeri Big Creek 74 (serotype O2)
Brite
KEGG Orthology (KO) [BR:
yrb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
yrb03016
]
UGYR_13400
Enzymes [BR:
yrb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
UGYR_13400
Transfer RNA biogenesis [BR:
yrb03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
UGYR_13400
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
AKA39292
UniProt:
A0A085U367
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All DBs
Position
complement(2978871..2979431)
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AA seq
186 aa
AA seq
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MTDPVNRRLFFALALAKPHQQQIVQWRAEQFAAETGHPIAAANLHLTLAFLGEVSEQKSQ
ALQQLAGRIHQPAFTIRLDDLGHWPGSGVVWLGCKQAPRGLLQLAELLRSQAARNGCYQN
PLPFHPHITLFRHATQPVMLPPKADVGQFTPNQFSLYESVYSRGRTRYKVLKSWPLGDKI
RKEDAI
NT seq
561 nt
NT seq
+upstream
nt +downstream
nt
atgactgatccagtaaaccgacgactgttctttgctctggcgctagccaaaccccatcag
caacagattgtacaatggcgcgcagaacagtttgcggcagaaaccggccacccgattgct
gccgccaatttacacctgacgctagcctttctcggcgaggtgagtgagcaaaaatcacag
gcgctacaacagttggccggacgtattcaccagcccgcgttcaccattagactcgacgac
ttggggcattggccaggttctggcgtcgtgtggttggggtgtaagcaagcgccaagagga
ttattgcagcttgcagaattattgcgctctcaagctgcacgcaatggctgctaccaaaat
ccactgccgtttcatcctcatatcactctgtttcgccatgccacccaaccggttatgtta
ccgcccaaagcggatgtgggacaatttacaccaaatcagttctcactctatgaatcagta
tatagccgtgggcgcacccgttataaagtgcttaaaagctggccgttgggcgataaaata
aggaaagaagatgcaatttga
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