Yersinia ruckeri Big Creek 74 (serotype O2): UGYR_15715
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Entry
UGYR_15715 CDS
T03887
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
yrb
Yersinia ruckeri Big Creek 74 (serotype O2)
Pathway
yrb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
yrb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
UGYR_15715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yrb03400
]
UGYR_15715
DNA repair and recombination proteins [BR:
yrb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
UGYR_15715
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
UGYR_15715
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
SBDS_domain_II
UB2H
AAA_30
DUF87
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKA39682
UniProt:
A0A085U4G3
LinkDB
All DBs
Position
3486511..3488529
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AA seq
672 aa
AA seq
DB search
MSKLFKLHSEFKPAGDQPEAIRQLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPT
MILAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRAILRRLAELQ
YARNDQAFQRGTFRVRGEVIDIFPAESDELALRVELFDEEVERLSLFDPLTGQLQQEIAR
FTVYPKTHYVTPRERILQAMEDIKVELAQRRKVLLENNKLIEEQRIAQRTQFDLEMMNEL
GYCSGIENYSRYLSGRGEGEAPPTLFDYLPPDGLLIVDESHVTIPQIGGMYKGDRSRKET
LVEYGFRLPSALDNRPMRFEEFEALAPQTIYVSATPGKYELEKSADEVVEQVVRPTGLLD
PIIEVRPVATQIDDLLSEIRQRAAINERVLVTTLTKRMAEDLTDYLVEHGERVRYLHSDI
DTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNLNGKAILYGDRITASMEKAISETERRREKQQAHNEALGIVPQGLNKKVGDILQLG
QPSLRGKARGKHGKAAAESAAAYDALTPKALDRKISELEAQMYTHAQNLEFEQAAELRDQ
VHKLRQQFIAIS
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaattattcaaactgcattctgagtttaagcctgctggcgatcaaccggaggcg
attcgccaactggaagaagggctggaaaacggcttggcgcaccagactttactgggcgtg
acggggtcggggaaaacgtttaccgtggccaacgttattgccgatcttaatcgtcccacc
atgattttggcgcccaataaaactttggcggcgcaactttatggcgaaatgaaagaattt
tttcccgataatgcggtggaatattttgtttcctactacgattactaccagcctgaagcc
tatgtgcccagttcagatacgtttatcgaaaaagatgcctcggtaaacgaacacatcgaa
caaatgcgcctttcggcgaccaaagccttgctggagcggcgtgatgtggtggtggtggct
tcggtttctgccatctacggtttgggcgatccggatctttatctgaaaatgatgctgcat
ctcaccaaagggatgattatcgaccagcgggcaattttgcgccgcttggctgagttgcag
tatgcccgtaacgatcaggcattccagcgtgggactttccgagttcgtggtgaagtgatc
gatatcttcccggcggaatccgacgaactggcactacgcgtcgagctatttgatgaggaa
gttgagcgactctctctgtttgatcctttgacggggcaattacagcaagagatagcgcgt
tttacggtatatccgaagacgcattacgtcacaccgcgcgagcgaattctgcaagcgatg
gaagatatcaaagtcgaattggcgcagcggcgtaaggttctgttggagaataataaatta
atcgaagaacagcgcattgcgcaacgtacgcagtttgatttggaaatgatgaatgaactg
ggctattgctcaggcattgaaaactactcgcgctatctttccgggcgtggtgaaggtgag
gcaccaccgacactgtttgactatttgccgcctgatggtctgctgatcgtggatgagtcc
cacgtgactatcccgcagattggcgggatgtacaaaggagaccgttcccgcaaagaaacg
ctggtggaatacggtttccgtctgccgtcagcgctggataatcgcccgatgcgctttgaa
gagtttgaggctttagcaccgcaaaccatctatgtttcggcaacgccagggaaatacgag
ctggagaaatctgctgatgaagtggttgagcaggttgtgcgaccgacggggttgctggat
ccgatcattgaagtgcgtcctgtcgctacgcagattgatgatttgctgtctgagattcgc
caacgggcagcgattaatgagcgagtattggtgaccacgctgaccaagcgtatggccgag
gatttaactgattatctggttgagcacggtgagcgggtgcgttatctccactctgatatt
gatactgttgaacgggttgagatcattcgcgatttacggcttggtgagtttgatgtactc
gtggggataaacctgttgcgtgaaggtttggatatgccggaagtgtcattggtcgctatt
ttggatgcggataaagaaggcttcttgcgttcagaacgctcgctgattcaaaccattggt
cgggcagcccgtaacctgaatggtaaagcaattctttacggcgacagaattacggcttcg
atggaaaaagctatcagtgaaaccgagcgtcgccgagaaaaacagcaggcgcataacgag
gctctgggcattgttccacaaggcctgaataagaaagtcggtgatatactacaactgggg
cagccttctctgcgtggtaaagctcgagggaaacatggcaaggcagcggcagaaagcgcg
gcggcctatgatgcgctaacaccgaaagccttggatcgcaaaatcagcgaactggaggca
cagatgtatactcacgcgcagaaccttgagtttgagcaggccgcagaactgcgggatcag
gtacataaattgcggcaacagtttattgctatttcctga
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