Yokenella regensburgei: HEC60_00645
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Entry
HEC60_00645 CDS
T06519
Symbol
speF
Name
(GenBank) ornithine decarboxylase SpeF
KO
K01581
ornithine decarboxylase [EC:
4.1.1.17
]
Organism
yre
Yokenella regensburgei
Pathway
yre00330
Arginine and proline metabolism
yre00480
Glutathione metabolism
yre01100
Metabolic pathways
yre01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
yre00001
]
09100 Metabolism
09105 Amino acid metabolism
00330 Arginine and proline metabolism
HEC60_00645 (speF)
09106 Metabolism of other amino acids
00480 Glutathione metabolism
HEC60_00645 (speF)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
HEC60_00645 (speF)
Enzymes [BR:
yre01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.17 ornithine decarboxylase
HEC60_00645 (speF)
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Ortholog
Paralog
GFIT
Motif
Pfam:
OKR_DC_1
OKR_DC_1_C
OKR_DC_1_N
Beta_elim_lyase
ADAMTSL1
BREX_PglY_2nd
Motif
Other DBs
NCBI-ProteinID:
QIU87976
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All DBs
Position
complement(127933..130131)
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AA seq
732 aa
AA seq
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MTDLKIAVSHTCPDCFSTQRSIVNTSETNFIDVAAAVLTIEDVECGKLDEIQATGYNIPV
FIAINKEEVVPSEYLSAIQGVFEHDETRNDFYGRQLEAAAHKYETQLRPPFFRALVDYVK
QGNSAFDCPGHQGGEFFRRHPAGNQFVEYFGETLFRSDLCNADVAMGDLLIHEGAPCVAQ
QHAAKVFNADKTYFVLNGTSSSNKVVLNALLTPGDLVLFDRNNHKSNHHGALLQAGATPV
YLETARNPYGFIGGIDAHCFEESYLRELIAEVAPQRKQEARPFRLAVIQLGTYDGTIYNA
RQVVDKIGHLCDYILFDSAWVGYEQFIPMMADCSPLLLDLNENDPGILVTQSVHKQQAGF
SQTSQIHKKDSHIKGQQRYVPHKRLNNAFMMHASTSPFYPLFAALDVNAKMHEGESGRNM
WMDCVVNGINARKLILESCNHIRPFVPAMVDGKPWQSYETAQIAVDLRFFEFVPGEHWHA
FEGYAAHQYFVDPCKLLLTTPGINAATGEYEKFGVPATILANFLRENGVVPEKCDLNSIL
FLLTPAEDMAKLQQLVALLARFDKLLDADAPLQEVLPSIYSQHKERYAGYTLRQLCQEMH
DLYARHNVKQLQKEMFRKDHFPRVSMNPQDANYAYLRGEVDLVPLPKAEGRIAAEGALPY
PPGVLCVVPGEIWGGAVLQYFTALEEGINLLPGFAPELQGVYIQEHDGRKQVWCYVIAPR
DKQGALLAGEKL
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgactgatttaaaaattgccgttagccatacctgtccggactgtttttctacacagcgt
agtattgtaaacacctctgaaactaattttattgatgttgccgcagcagtattgacgatc
gaagatgtcgaatgcggtaaactcgatgaaatccaggcaaccggatataatattccggtg
ttcattgctattaataaagaagaagtcgttccttcagaatatctttcagctattcagggg
gtatttgagcacgacgaaacccgcaatgacttctacggccgtcagctggaagccgccgcg
cataaatacgaaacgcagctgcgcccaccgttcttccgtgcgttggtcgattacgtgaaa
cagggtaacagcgccttcgactgcccggggcaccagggtggtgaattcttccgccgtcat
ccggccgggaatcagtttgttgagtactttggcgaaaccctgttccgctcagacctgtgc
aacgccgacgtcgcgatgggcgatctgcttatccacgaaggtgcgccatgtgtcgctcag
cagcatgctgctaaagtcttcaacgccgacaaaacctacttcgtactgaacggtacgtct
tcatccaacaaagtggtgctgaacgccctgctcaccccgggtgacctggtgctgtttgac
cgcaacaaccacaagtctaaccaccacggtgcactgctgcaggcgggtgcaacgccggtg
tatctggaaaccgcacgtaacccgtacggcttcatcggtgggattgacgcacactgcttc
gaagagagctatctgcgcgaactgattgccgaagttgcaccgcagcgtaaacaggaagca
cgtcctttccgcctggcggttattcagctcggcacctacgacggcaccatctataacgcc
cgtcaggtcgtcgataagattggtcatctgtgtgactacatcctgtttgactccgcctgg
gtaggctacgagcagttcattccgatgatggctgactgttccccgctgctgctggatctg
aatgaaaacgatccgggtatcctcgtcactcagtccgtgcataaacagcaggcaggtttc
tctcagacctcacagatccacaaaaaagacagccatatcaaagggcaacaacgttacgtc
ccgcataagcgtcttaacaacgcctttatgatgcacgcctccaccagcccgttctacccg
ctgtttgccgcactcgacgtcaacgccaaaatgcatgaaggcgaaagcggacgcaacatg
tggatggactgcgtggtgaacggcatcaacgcgcgtaagctgattctggaaagctgcaac
catatccgtccgttcgtaccagcaatggttgatggtaaaccgtggcagtcttatgaaact
gcgcaaatcgccgtggacctgcgtttcttcgaatttgtgcctggtgaacactggcacgcg
tttgaaggctacgcagcacaccaatacttcgttgacccatgcaaactgctgctcaccacg
ccgggcattaatgccgccaccggcgagtacgagaagtttggtgttccggccacgattctc
gccaacttcctgcgtgaaaacggcgtcgtcccggaaaaatgcgacctcaactcaatcctg
ttcctgctgaccccggcggaagacatggccaaactgcaacagctggtggccctgctggcg
cgctttgacaaactgctcgacgccgatgcaccgctgcaggaagtgctgccgtctatctac
agccagcacaaagagcgttatgccggttataccctgcgccagctgtgccaggaaatgcat
gacctgtacgcccgccataacgttaaacagctgcaaaaagagatgttccgtaaggatcac
ttcccacgcgtcagcatgaacccacaggacgctaactacgcctatctgcgcggcgaagtc
gacctggttccgctgccgaaggctgaaggtcgtattgccgctgaaggtgcgcttccttac
ccgccaggagtgctgtgtgtcgttccgggcgaaatctggggtggtgccgttctgcagtat
ttcaccgcgcttgaggaaggtatcaacctgctgccgggctttgcgccagagctgcagggg
gtttacatccaggaacacgacggtcgcaaacaggtctggtgttatgtgatagcaccgcgc
gataaacaaggcgcgctgctggcaggggaaaaattatga
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