Yokenella regensburgei: HEC60_01795
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Entry
HEC60_01795 CDS
T06519
Symbol
ldtD
Name
(GenBank) L,D-transpeptidase
KO
K21470
L,D-transpeptidase YcbB
Organism
yre
Yokenella regensburgei
Brite
KEGG Orthology (KO) [BR:
yre00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
yre01002
]
HEC60_01795 (ldtD)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
yre01011
]
HEC60_01795 (ldtD)
Peptidases and inhibitors [BR:
yre01002
]
Cysteine peptidases
Family C82
HEC60_01795 (ldtD)
Peptidoglycan biosynthesis and degradation proteins [BR:
yre01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
HEC60_01795 (ldtD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
Tox-MPTase3
Motif
Other DBs
NCBI-ProteinID:
QIU88191
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Position
383219..385018
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AA seq
599 aa
AA seq
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MLLNKARLRRLSALSVCLTFTIAPLFSVQADEPEMVPTDSSATLAETSTAMAPASSESNS
VAMMAGIQPLPEGAAAKARSEILSLLPAGYTPVYMNALTGLYAARSMKPMWENRDAVQAF
QQQLAEVAIAGFQPQFIRWVELLTDPNVSGVARDVVLSDAMMGYLHYLSNISMQGTRWLY
SEKPYTLATPPLSVINQWQLALDNGSLATFIAGLAPQHPQYAAMHQSLLALVADSRPWPQ
LTGSGKLNPGQSGKDVLALREILRRSGMMDPAPHIALPGDSPVVSPSAKKYSTAKSESPV
YDRQLVEAVKRFQASQGLGADGVIGPSTRDWLNVTPAQRAGVLALNIQRLRLLPGKLSTA
IMVNIPAFSLEYYQNGDQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLAKKDI
LPKVWNDPGYLERHNYTVLRGWNSKETINPWHVDWSTITPSNLPFRFQQAPGATNSLGRY
KFNMPSSEAIYLHDTPNHNLFQKDVRALSSGCVRVNKASDLANMLLQDAGWNDSRISDAL
KQGDTRYVNIRQNIPVNLYYLTAFVGADGRTQYRTDIYNYDLTARSGAQILSKAEQLIR
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgttgcttaataaagccagattacgtcgactgtcagcgctgagtgtttgcctgacattc
accattgctccactgttcagcgtccaggccgatgagcctgaaatggtgcctaccgacagc
tctgccaccctggctgagacgtccacggcaatggcacctgcgagtagtgagtctaattcc
gtcgccatgatggctggcatccagccgctgcctgaaggtgctgcagcaaaagcccgtagt
gagatcctgtctctcctgcctgcgggatatacccccgtctacatgaacgcgcttaccggg
ctttatgccgcgcgttcgatgaaacccatgtgggaaaatcgtgacgccgtacaggcgttt
cagcaacagcttgcagaggtcgccatcgctggcttccagccgcagtttatccgttgggta
gaactgttgaccgatccaaacgtcagcggcgttgcccgcgatgtggtgctctcggatgcg
atgatggggtatctgcattacctcagcaatatctcgatgcagggtacgcgctggctctat
agcgaaaaaccttacacgctggctacaccaccgctttcggtgataaaccagtggcagctg
gcgctggataacggttcgctggcgacatttattgccgggctggcgccacagcatccgcag
tatgcggcaatgcaccagtcgttgctggcgctggtggcggactcccgtccctggccgcag
ctgaccgggagcggtaagttgaacccggggcagtcgggcaaagacgtgctggcgctgcgg
gagatcctgcgtcgttccggcatgatggaccccgcaccgcatatcgccctgccaggcgat
agcccggtggtgagcccgtcggcgaaaaaatacagcaccgctaaatcggaatcgccggtc
tatgaccgccagttggtcgaggcggtaaaacgctttcaggccagtcaagggctgggcgcc
gatggcgtgatagggccgtccactcgtgactggctgaacgtgacgcctgcacagcgggca
ggggtgctggcgctgaatatccagcgcctgcgcctgctgccgggcaagctctcgacagcc
attatggtgaacattccggcattttcgctggagtactaccagaacggcgatcaggtgctg
gcttcacgggtgattgtcggtcgccccgatcgtaaaacgccgatgatgagcagcgcgctg
aacaacgtggtggtcaacccgccgtggaacgtgccgccaacgcttgcgaaaaaagatatt
ctgccgaaggtgtggaacgatccgggatacctggagcgccacaactacaccgtgctgcgc
ggctggaacagcaaagagacgattaacccctggcatgttgactggtcgactatcacgcca
tccaacctgccgttccgcttccagcaggctccgggggcaactaactcgctggggcgctac
aagttcaacatgccgagctcagaagcgatttatctgcacgatacgccaaaccataatctt
ttccagaaagatgtcagggcgttaagctcaggttgcgtgcgcgtaaataaagcttctgac
ctggcgaatatgctgttgcaggatgctggctggaatgattcacgcatttccgatgcgctg
aaacaaggtgatacacgttacgtcaatattcgacaaaatattccggttaacctctattat
ttgaccgcatttgtgggcgctgatggtcggacacaatatcgaacagatatttacaattat
gacctcactgcgcgatctggcgcacaaattctgtcaaaagcggaacaattaatcaggtaa
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