Yokenella regensburgei: HEC60_04160
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Entry
HEC60_04160 CDS
T06519
Symbol
xthA
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
yre
Yokenella regensburgei
Pathway
yre03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
yre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HEC60_04160 (xthA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yre03400
]
HEC60_04160 (xthA)
Enzymes [BR:
yre01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
HEC60_04160 (xthA)
DNA repair and recombination proteins [BR:
yre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
HEC60_04160 (xthA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_3
Motif
Other DBs
NCBI-ProteinID:
QIU88592
LinkDB
All DBs
Position
complement(843897..844706)
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AA seq
269 aa
AA seq
DB search
MKFVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEDVAKLGYNVFYHGQK
GHYGVALLTKETPIAVRRGFPGDDEEAQRRIIMADIPSPFGTVTVINGYFPQGESRDHPT
KFPAKTRFYQDLQDYLTGELNKDNPVLIMGDMNISPTDLDIGIGEDSRKRWLRTGKCSFL
PEEREWMQRLLGWGLVDTWRHANPDNHDRFSWFDYRSKGFDDNRGLRIDLLLASNPLAQH
CVETGIDYDIRSMEKPSDHAPVWATFKGK
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgtttcttttaatatcaacggcctgcgcgcccgccctcatcaactggaagcc
atcgtcgagaaacatcagcccgacgtcattggcctgcaggagacaaaggttcacgacgac
atgttcccgctcgaagatgtcgccaaactcggttacaacgtcttttatcacgggcagaaa
ggccactacggcgtggcgctgctgaccaaagaaacgcccattgccgtgcgtcgcggtttt
ccgggcgatgacgaagaagcccagcgccgcatcatcatggcggacatcccttcgccgttc
ggcactgtcaccgtgattaacggctacttcccgcagggtgaaagccgcgaccatccgacg
aagttccctgccaaaaccaggttctatcaggatctgcaggattaccttaccggcgagctg
aataaggacaatccggtactaatcatgggtgatatgaacatcagcccgacggatctggat
atcggcattggcgaagacagccgcaaacgctggctgcgcaccggcaaatgctccttcctg
ccggaagagcgcgagtggatgcagcgcctgctgggctgggggctggtagatacctggcgc
cacgctaacccggataaccacgaccgcttctcgtggttcgactaccgctccaaaggtttt
gacgataaccgcggcctgcgcatagatctgctgctggcaagcaacccgctggcccagcac
tgcgtcgaaaccggcatcgactacgacatccgcagcatggaaaaaccgtccgaccacgcg
ccggtctgggcaacctttaaaggaaaataa
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