Yokenella regensburgei: HEC60_04755
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Entry
HEC60_04755 CDS
T06519
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
yre
Yokenella regensburgei
Pathway
yre02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
yre00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
HEC60_04755 (pdeR)
Enzymes [BR:
yre01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
HEC60_04755 (pdeR)
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
PAS_4
GGDEF_2
PAS_10
Motif
Other DBs
NCBI-ProteinID:
QIU88706
LinkDB
All DBs
Position
complement(977737..979728)
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AA seq
663 aa
AA seq
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MSEDLEQNLLYRYLGTTSPYWRLSADSNALHLSATEGTDTRQVVALNASQADSIREMTVI
TSSITMSVSLYGNDVPVHLVGRKISKSQWAGTASAWADTTSVARDLVQGLSFAEQVVSEA
NSVIVILDKQGNIQRFNRLCEEYTGLKEHEVIGQNVFKLFMSRAEAAASKKNITGFFRNG
SSYEVERWIKTRKGQRLFLFRNKFVHSGSGKNEIFLICSGTDITEERRAQERLRVLANTD
TITGLPNRNAINEMISDAITLRGDTQVGVVYLDLDNFKKVNDAYGHMFGDQLLQSVALSI
LSCLEEGQTLARLGGDEFIVLATDSSQSSLEAMASRILTRLRDPFRIGLIEVYTGCSLGI
SLAPQHGTDRESLIRNSDTAMYTAKEGGRGKFCVFSPEMNQRVFEYLWLDTNLRKALEND
QLVIHYQPKVTWRGEVRSLEALVRWQSPERGLIPPLEFISYAEESGLIVPLGRWVMLDVV
RQVALWREKGIDLRVAVNVSARQLADQTIFSDLKQALHDLNLEFCPIDVELTESCLIENG
ELAQSVIEQFSKLGAQVHLDDFGTGYSSLSQLARFPIDAIKLDQSFVRDIHKHSVSQSLV
RAIVAVAQALNLQVIAEGVESAKEDAFLTKNGVNERQGYLFAKPMPAAVFERWFKRRQSR
KTR
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaggatctggagcaaaacctgctctatcgctacctgggaaccaccagtccatac
tggcgtttatccgcagacagcaacgccctgcacttgtccgccactgagggtacggatact
cgtcaggtcgtggcgctgaacgcgagtcaggcggattcaatacgtgagatgacggtgatc
acctcaagtatcaccatgtctgtatcgctgtatggcaacgacgttcccgtgcacctggtg
gggcgtaaaatcagtaaatcccagtgggcaggcaccgcatcggcctgggccgataccact
tcggtggcccgcgatctggtccaggggctctcttttgccgagcaggtggtttccgaagcc
aactcggttatcgtcattctcgataaacaaggcaatattcagcgctttaatcgcctctgc
gaggaatacaccggcctgaaagagcatgaagttatcggccagaacgtctttaagctcttc
atgagccgtgctgaagccgcggcgtcgaaaaaaaatatcaccggattcttccgtaacggc
agctcctacgaggtggaacgctggataaagacccgcaaagggcagcgtctgttcctgttc
cgcaataaattcgtccatagcggcagcggcaagaacgaaattttccttatctgctcgggt
acggatatcaccgaagagcgccgcgcccaggaacgactgcgggtgctggcgaacaccgat
accattaccgggttgccaaatcgtaacgctatcaatgagatgattagcgatgccatcacg
cttcgcggtgacacccaggtcggcgtagtttatctcgacctcgataacttcaagaaagta
aacgatgcctacgggcatatgtttggcgatcagctgctgcagtctgtcgccttatcgatt
ttgagctgtctggaagagggccagacgctggcgcgtctgggtggtgatgagtttatcgta
ctggctaccgactcctcacagagctcgctggaggccatggcgtcacggatcctcactcgt
ttgcgcgaccccttccgcatcggacttatcgaagtctataccggctgttcgctggggatt
tcacttgccccgcagcacggtaccgatcgcgagagcctcatccgcaactcggataccgcg
atgtacaccgccaaagaaggcggtcgcggcaagttttgcgtcttctccccggaaatgaat
cagcgcgtctttgagtatttgtggctcgacaccaacctgcgcaaagcgctggaaaacgac
caactggttattcactatcagccgaaagtgacctggcgtggcgaggtgcgtagcctcgaa
gcgctggtacgctggcaatcgccggagcgcgggctgatcccaccgctggagtttatctcc
tatgcggaagagtcggggctgattgtaccgcttgggcgttgggtgatgctcgacgtcgtg
cggcaggtggcgctctggcgcgagaaaggtatcgatctgcgggttgcggtgaacgtttct
gcccgccagttggccgatcaaactattttcagcgacctgaaacaggcgctgcacgattta
aacctcgagttttgccctatcgatgtagagctgacggaaagctgtctgattgaaaacggt
gagctggcgcagtcggtgatagagcagttcagcaagctgggtgcgcaagtgcatctggat
gacttcggcaccggttattcgtcgctgtcgcagctggcccgcttccccatcgatgccatt
aagctcgatcagtcgtttgtgcgcgatattcacaaacattcggtctcgcagtcgttggtc
agggcgatcgtggcggtagcgcaggcgctcaacctacaggtgattgcagaaggggtagaa
agcgcaaaagaagacgcctttcttaccaagaacggcgtcaacgaacggcaaggatactta
tttgccaagcccatgcccgcagccgttttcgagcgatggtttaagcgtcgtcagtcacgg
aaaacccgttaa
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