Yokenella regensburgei: HEC60_04760
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Entry
HEC60_04760 CDS
T06519
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
yre
Yokenella regensburgei
Brite
KEGG Orthology (KO) [BR:
yre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
yre03016
]
HEC60_04760
Enzymes [BR:
yre01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HEC60_04760
Transfer RNA biogenesis [BR:
yre03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HEC60_04760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
ODP
Motif
Other DBs
NCBI-ProteinID:
QIU92216
LinkDB
All DBs
Position
complement(979902..981836)
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRAEGVVKGTEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRV
IAVIHSEKDRESAEPEELVEPFLTRFVGRVQRKDDRLSIVPDHPLLKDAIQCRAARGVEH
DFKEGDWAVAEMRRHPLKGDRSFYAELTQFITYGEDHFVPWWVTLARHNLEKEAPNGVAT
EMQDEGLVRRDLTSLDFVTIDSASTEDMDDALYAEDAQDGKLHLTVAIADPTAWIVEGSK
LDESAKVRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTIAADGTIEDDIEF
FAATIESKAKLAYDDVSNWLENTGDWKPENERIAGQITLLKRVCEQRSEWRKTHALVFKD
RPDYRFVLGEKGDVLDIIAEPRRIANRIVEESMIAANICAARVLRDKLGFGIYNVHTGFD
PASSEQLAALLKTHDVHVDPQEVLTLPGFCKLRRELDAQPSGFLDSRIRRFQSFAEISTE
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIVKGETIARPQDEITVQMAERRRLNRM
AERDVADWLYARFLSPKAGTDTRFAAEIIDISRGGMRVRLVDNGAVAFIPAPFLHAVRDE
MVCSQENGTVQIKGEVAYKVTDVIDVTIAEVRMETRSVIARPLA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaggacaacccgctgcttgctcagctaaaacagcaactgcattcccagacgcct
cgtgctgaaggcgtcgtcaaaggcacggaaaaaggcttcggcttcctcgaagttgatgcc
caaaaaagctactttattccgccgccgcaaatgaagaaagtcatgcacggcgaccgcgtt
atcgccgtcattcacagcgaaaaagaccgcgaaagcgcagagccggaagagctggttgag
ccgttcctgacgcgcttcgttggccgtgtacagagaaaagacgaccgtctgtctatcgtt
cctgaccatccattgctgaaagatgccattcagtgccgcgctgcccgtggcgttgaacac
gattttaaagagggtgactgggccgtagcagaaatgcgccgtcatccgctaaagggcgac
cgcagcttctatgcggagctcacccagtttattacctacggcgaagatcacttcgtaccg
tggtgggtcacccttgcacgtcataatcttgagaaagaagcgccgaacggcgtcgccacc
gagatgcaggacgaagggcttgtccgccgcgacctcacctcgcttgatttcgtcaccatc
gacagcgccagcaccgaagatatggacgatgcgctgtacgcagaagatgcgcaggacggc
aagctgcatctgaccgttgcgatcgctgaccccaccgcgtggattgtagaaggcagcaag
cttgatgagagcgcgaaagtgcgtgctttcaccaactatctgccgggcttcaacatcccg
atgctgccgcgtgagctgtctgatgacctgtgctcgctgcgcgccaacgaagtgcgtccg
gtactggcctgccgcatgaccatcgccgccgacggcaccattgaagatgacatcgagttc
ttcgccgccaccatcgaatcgaaagctaagctcgcttatgacgatgtgtctaactggctg
gagaataccggcgactggaaacctgagaacgagcgcattgccggtcagataacgctgctc
aagcgcgtctgcgagcagcgtagcgaatggcgtaaaacccatgcgctggtgttcaaagat
cgtccggactaccgtttcgtgctcggcgagaaaggcgacgtgctggatatcattgctgaa
ccacgtcgcattgcgaaccgcatcgtggaagaatccatgattgccgccaacatctgcgcc
gcccgcgtgctgcgcgataagctcggctttggcatctacaacgtgcataccggcttcgat
ccggccagcagcgagcagcttgccgccctgctgaaaactcacgacgtacacgttgacccg
caggaagtgttgacgcttccgggcttctgcaagctgcgtcgcgagctggatgctcagcct
tctggcttcctcgacagccgtattcgtcgcttccagtcgtttgccgagatcagtaccgag
ccgggtccgcatttcggcctggggcttgaggcctacgccacctggacttcacctatccgt
aagtacggcgacatggttaaccatcgtctgctgaaggctatcgtgaaaggtgaaaccatc
gctcgtccgcaggatgagataaccgtacagatggccgaacgtcgtcgcctgaaccgcatg
gccgagcgcgatgtggccgactggctgtacgcccgcttcctgagcccgaaagccggtacc
gacacccgctttgctgctgagatcatcgacatcagccgtggtgggatgcgcgttcgtctg
gtggataacggcgcagtggcctttattccggcaccgttcctgcacgccgtgcgtgacgag
atggtctgcagtcaggaaaacggcaccgtgcagatcaaaggagaagtggcttacaaagtg
actgacgttatcgatgtcaccatcgcggaagttcgcatggaaacccgtagcgttatcgcc
cgcccgctcgcctga
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