Yokenella regensburgei: HEC60_05225
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Entry
HEC60_05225 CDS
T06519
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
yre
Yokenella regensburgei
Brite
KEGG Orthology (KO) [BR:
yre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yre03019
]
HEC60_05225 (hrpA)
Enzymes [BR:
yre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HEC60_05225 (hrpA)
Messenger RNA biogenesis [BR:
yre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HEC60_05225 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
nSTAND3
T2SSE
NACHT
ResIII
PhoH
NTPase_1
AAA_16
SLFN-g3_helicase
MCM
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QIU92219
LinkDB
All DBs
Position
1085279..1089178
Genome browser
AA seq
1299 aa
AA seq
DB search
MTEQQKITFSSLYPQLDNLMLRDKQRFSRRLQGVKKVKNPESQQAILQEMANEISQAAAS
VARRESARPAITYPENLPVSQKKQDILNAIRDHQVVIVAGETGSGKTTQLPKICMELGRG
VKGLIGHTQPRRLAARTVANRIAEELQTEPGGCVGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKIIITSATIDPERFSRH
FNNAPIIEVSGRTFPVEVRYRPIVEEADDTERDQLQAIFDAVDELGRESAGDILIFMSGE
REIRDTADALSKRDLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
QTAYKLTAQGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRLCRTEYLNYLRVREWQDIYTQ
LRQVVKELGIPVNSTPAEYREIHISLLTGLLSHIGMKDADKQEFTGARNARFSIFPGSGL
FKKPPKWTMVAELVETSRLWGRIAARIDPEWVEPVAQHLLKRSYSEPHWERAQGAVMATE
KVTVYGLPVVAARKVNYSQIDPMLCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELE
HKTRRRDILVDDESLFEFYDQRISHDVISARHFDNWWKKASRETPDLLNFEKSMLIKEGA
ESVSKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVDEGGFEWQIPGLRR
ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLESLERELRRMTGVTVDREDW
HWDQVPDHLKVTFRVLDDKNKKLQEGRDLAALKAALKGKVQETLSAVADDGIEQSGLHIW
SFGELPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPQEQQQAMWRGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCISCGVDKLIHEAGGPVWSESGFTALHDK
VRAGLNETVVEIAKQVEQILTTVFNINKRLKGRVDMTMALGLSDVKSQMAGLVYRGFVTG
NGFRKLGDTLRYLQAIERRLEKMAIDPHRDRAQMLKVDSVQQAWQQWFNKLPPARRDDDD
VKEIRWMLEELRVSYFAQQLGTPYPISDKRILQAMEQLA
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaacaaaaaatcaccttctcatcactctacccgcagcttgataacctgatg
ttgcgcgacaaacagcgcttctcgcgtcgtctgcagggggtgaagaaagttaaaaatcct
gagtctcagcaggccattcttcaggaaatggcgaatgaaatcagtcaggctgcggcgtcg
gttgcacgccgtgaatccgcgcgtccggcgattacttacccggaaaatctgccggtcagc
cagaagaaacaggacatcctcaacgccattcgcgaccaccaggtggtgattgtggccggg
gaaaccggctccgggaaaaccacccagctgccgaagatctgtatggagctgggacgcggg
gtgaaagggctgattggccacacccagccgcgtcgtctggcggcgcgtaccgttgccaac
cgtattgccgaagagctgcaaaccgagccgggcggctgcgtggggtataaagttcgcttt
agcgaccacgttagcgacaacaccatggtcaagctgatgaccgacgggatcctgctggcg
gaaatccagcaggaccgtctgctgatgcagtacgacaccatcattattgatgaagcgcac
gagcgtagtctcaacatcgacttcctgctcggatacctgcgtgagctgctgccgcggcgt
ccggatctgaaaatcatcatcacctccgcgaccatcgatcctgagcgcttctcgcgtcac
ttcaataatgcgccaattattgaggtctcggggcggacattcccggttgaagtgcgctat
cgcccgattgtcgaagaagccgatgataccgagcgcgatcagctgcaggcgatttttgat
gccgtggatgagctgggtcgtgagagtgcgggtgatattctgatcttcatgagcggtgaa
cgtgaaatccgcgataccgccgatgcgctcagcaagcgtgacctgcgccataccgagatc
ctgccgctgtacgcgcgtctgtcgaacagcgagcaaaaccgcgtgttccagtcgcacagc
gggcggcgcatcgtgctggcgaccaacgtggctgaaacctcgctgaccgtgccgggcatc
aagtacgttatcgatccgggtaccgcgcggatcagccgctacagctaccgcactaaagtc
cagcgcctgcccattgaaccggtatctcaagcgtcggctaaccagcgtaagggccgctgc
ggacgtgtgtcggaaggtatctgtattcgactctactctgaggatgatttcctctcgcgc
ccggagtttaccgacccggaaattctgcgcaccaacctggcctcggtcattctgcagatg
acggcgctggggctgggggatattgcggccttcccgtttgtggaggcgccggataaacgt
aacatccaggatggcgtacgcctgctcgaagagctgggtgccattaccaccgacgaacag
caaacggcctataagctcaccgcacaggggcgtcagctttcgcaactgccggtggatccg
cgcctggcgcgaatggtgctggaggcgcaaaaacacggctgcgtgcgtgaggcgatgatc
attacctcggcgctgtcgattcaggacccgcgcgagcgtccgatggacaaacagcaggcc
tcggacgaaaagcatcgtcgtttccacgacaaagagtccgatttcctcgctttcgtcaat
ctgtggaactacctcggcgagcagcagaaagcgctgtcgtcgaaccagttccgccgctta
tgccgtaccgaatatctcaactatctgcgcgtgcgcgagtggcaggatatctacacccag
ctgcgccaggtggtgaaggagctggggattccggtgaacagcacaccggcggagtatcgt
gagatccacatttcgttgctaaccggtctgctatcgcacatcgggatgaaagatgccgat
aagcaggaatttaccggcgcgcgcaacgcccgcttctcgatcttcccgggttctggttta
ttcaaaaaaccgccgaagtggacgatggtggcagaacttgtcgaaaccagccgcctgtgg
gggcgcatcgcggcccgtatcgatccggaatgggtcgagccggtggctcagcacctgctg
aaacgctcgtacagcgagccgcactgggagcgcgcgcagggcgcggtgatggcgaccgag
aaggtgacggtgtacggcctgccggtggttgctgcccgtaaggttaactacagccagatt
gacccgatgctctgccgcgagctgtttattcgccacgcgctggtagagggcgactggcag
acgcgtcacgctttcttccgcgagaacctgaagctgcgggcggaagtggaagagctggaa
cataaaacccgtcgccgcgatattctggtggatgatgaatcgttgtttgagttctacgac
cagcgcatcagccatgatgtgatttctgcccgccacttcgacaactggtggaaaaaggcc
agccgtgaaacgccggacctgctcaactttgagaagagcatgcttatcaaagaaggggcg
gagtcggttagcaaactcgattacccgaacttctggcatcagggcaacctgaagctgcgc
ctgagctaccagtttgaacccggtgccgatgccgacggcgtgacggtgcatattccgctg
ccgctgctgaaccaggttgatgaaggcggcttcgagtggcaaatcccggggctgcgtcgc
gagctggtgattgcactgattaaatccctgccaaaacccgtgcgacgtaattttgttccg
gcaccgaactatgccgaagcgttcctgggccgcgttacgccactggagctaccgctgctg
gaatcgcttgagcgtgaactacggcgaatgaccggcgtgaccgttgaccgtgaagactgg
cactgggatcaggtgcccgatcacctgaaagtgacgttccgggtactcgacgacaaaaac
aaaaaactgcaggaagggcgtgaccttgccgcgctgaaggcagcgctgaaaggcaaggtg
caggaaacgctgtcggcggtagccgatgacggtattgagcagagcggcctgcacatctgg
agcttcggcgaactgccggaaagctacgaacagaagcgcggcaactacaaggtgaaggcc
tggcccgcgctggtggacgagcgtgacagcgtggctatcaaacttttcgataacccgcag
gaacaacagcaggcgatgtggcgcgggctgcgtcgtttgctgctgctcaacattccgtcg
ccgattaaatatctgcacgaaaaactgccgaacaaagccaagcttggactttacttcaac
ccgtacggcaaagtgctggatctcatcgacgactgcatctcctgcggcgtggataagctg
atccacgaggcgggtggcccggtgtggagcgagagcggttttaccgcgctgcacgataag
gttcgcgccgggcttaacgagacggtggtggagatagccaaacaggtcgagcagatattg
accacggtgttcaatatcaacaaacgcctgaaagggcgtgtggatatgaccatggcgctg
gggctgtctgacgtaaaatcgcagatggccggtctggtgtaccgtgggttcgttaccggc
aacggattccgcaaacttggcgatacgctgcgttatctgcaggcgattgagcgtcggctg
gagaaaatggcaatcgatccgcaccgcgatcgggcgcagatgctgaaagtcgacagcgtt
cagcaggcgtggcagcagtggttcaacaaactaccgcctgcccgtcgtgacgatgatgac
gtcaaagagatccgctggatgcttgaagagctgcgcgtcagctactttgcgcagcagctg
ggaacgccgtatccgatttcggataagcgtattttgcaggcgatggaacagctggcgtag
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