Yokenella regensburgei: HEC60_12205
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Entry
HEC60_12205 CDS
T06519
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
yre
Yokenella regensburgei
Brite
KEGG Orthology (KO) [BR:
yre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
yre03009
]
HEC60_12205 (srmB)
Enzymes [BR:
yre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HEC60_12205 (srmB)
Ribosome biogenesis [BR:
yre03009
]
Prokaryotic type
rRNA helicases
HEC60_12205 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QIU90019
LinkDB
All DBs
Position
2520028..2521359
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AA seq
443 aa
AA seq
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MTVTTFSELELDESLLDVLQNKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAFLL
PALQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELAANTHLDIATITGGVAFMNHA
EVFSENQDIVVATTGRLIQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEYIAAETRW
RKQTLLFSATLEGDAIKDFAERLLEDPVEVSATPSTRERKKIHQWYYRADNVEHKTALLV
HLLKQPEATRSIVFVRKRERVHELATWLREAGINNCYLEGEMVQAKRNEAIKRLTDGRVN
VLVATDVAARGIDIADVSHVFNFDMPRTGDTYLHRIGRTGRAGRKGTAISLVEAHDHLLL
GKIGRYVEEPLKSRVIDELRPTTRVPSEKLQGKPSKKVLAKREEKKKESKEKPRVKQRHR
DTRNIGKRRKPSGSGTPTPTTEE
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaacgactttttccgaactcgaactcgacgaaagccttctggatgtcctccag
aataaaggtttcactcgcccgaccgccattcaggctgccgctataccgcctgcgctcgat
ggccgtgatgtcctcggttctgcgccgaccggtaccggtaaaacagcggcatttttgctg
cccgcgttgcagcacctgctcgactttccgcgtaaaaaatccgggccgccgcgcattctg
atcctgacgccgacccgtgagctggcgatgcaggttgctgaccatgcgcgtgaattagcc
gccaatacgcatcttgatatcgccaccattaccggcggcgtcgcgtttatgaaccacgcg
gaagtgttcagcgaaaaccaggatatcgttgtcgccaccaccgggcgccttatccagtac
atcaaagaggaaaacttcgactgccgcgcggttgagacgctcatccttgatgaagcagac
cgtatgctggacatgggctttgctcaggatatcgaatatatcgccgcagaaacccgctgg
cgcaagcagaccctgctgttctccgccacgcttgaaggcgacgctatcaaagattttgcc
gagcgtctgctggaggatccggtcgaagtttccgcaacgccgtctacccgcgagcgcaag
aaaattcaccagtggtactatcgtgccgacaacgttgaacacaaaaccgcgctgctggtt
cacctgctgaaacagccggaagcaacccgctctatcgtcttcgtgcgtaaacgcgagcgc
gtgcatgagctggcgacctggctgcgtgaagcggggattaacaactgctatctcgaagga
gagatggtgcaggcaaagcgtaacgaagcgattaagcgtctgaccgatggacgagtgaac
gtgctggttgccaccgacgttgccgcccgcggcatcgacatcgccgacgtcagccacgtc
tttaactttgatatgccgcgcaccggcgatacctatctgcaccgtattggccgtaccggc
cgagctggtcgcaaaggtaccgctatctcactggtagaagcgcacgatcatctgctgctg
ggtaaaatcggccgctacgtcgaagagccgctgaagtcccgcgttatcgatgagctgcgt
ccgaccacccgcgtgccgagcgaaaaactgcagggcaagccgtcgaagaaagtgctcgcc
aaacgcgaagagaagaaaaaagagagcaaagagaagccgcgcgtgaagcagcgccatcgt
gataccaggaatattggtaaacgtcgtaagccgagcggtagcggcaccccaacgccgaca
actgaagaataa
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