Yokenella regensburgei: HEC60_13575
Help
Entry
HEC60_13575 CDS
T06519
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
yre
Yokenella regensburgei
Brite
KEGG Orthology (KO) [BR:
yre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
yre03009
]
HEC60_13575 (rlmD)
Enzymes [BR:
yre01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HEC60_13575 (rlmD)
Ribosome biogenesis [BR:
yre03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HEC60_13575 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
PCMT
RrnaAD
MTS
Methyltransf_4
FtsJ
Cons_hypoth95
Methyltransf_23
Methyltransf_11
Methyltransf_15
TPMT
Methyltr_RsmB-F
CMAS
PrmA
Motif
Other DBs
NCBI-ProteinID:
QIU90261
LinkDB
All DBs
Position
complement(2800449..2801747)
Genome browser
AA seq
432 aa
AA seq
DB search
MAQFYSAKRRVTTRQIITVTVNDLDPFGQGVARHNGKALFVSGLLPQESAEVTLTEDKKQ
YARAQVKRRLNDSPEREKPKCRHFGTCGGCQQQHASVDLQQRSKRAALARLMKHDVDEVI
AGTPWGYRRRARLSLNYQPKTQQLQMGFRKANASDIIDVGQCPILVPQLEALLAPLRECL
SSLKSARQLGHVELVLADNGPLMVLRHTAALPAADKEKLERFSHTHALALYLAPQSEILE
HVYGETPWYTSNGLRLTFSPRDFIQVNDNVNQQMVATALSWLDVQPDDRVLDLFCGMGNF
TLPLAQRAAEVVGVEGVPALVEKGLQNAALNHLHNVTFFHENLEEDVTRQTWAQHGFDKV
LLDPARAGAPGVMQHIIKLAPKRVVYVSCNPATLARDSEALLQAGYRIGRLAMLDMFPHT
GHLESMVLFEHI
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctactctgcaaaacggcgcgtgacgacgcgccagatcataaccgtgacg
gtcaatgacctcgatcccttcggtcagggcgtggcccgccataacggaaaagcgctgttt
gtgagtggcttactgccgcaggaaagcgcggaggtgacgctcaccgaagataaaaagcag
tatgcccgcgcacaggtaaaacgtcgactaaatgatagcccggagcgtgaaaagccgaaa
tgtcggcacttcggaacctgcggcggctgccagcaacaacatgcctctgttgacctgcag
cagcgcagcaagcgggcagcgcttgcgcgtctgatgaaacatgacgttgatgaagtgatt
gccggaacgccctggggctatcgtcgtcgggcgcgtctcagcctgaattaccagccgaaa
acccagcaactgcagatggggtttcgtaaagccaatgccagcgacatcatcgatgtgggg
caatgccccattttggtgccccaacttgaggcgctgctcgcgccgctgcgggaatgtctg
agtagcctgaaatctgctcgtcagctgggccacgtcgagctggtgctggccgataacggc
ccgctgatggtgctacgccatacggcagcgctgcctgctgccgacaaagaaaaactggaa
cgcttttcgcatactcacgcacttgcgctgtatctggccccgcaaagcgagatactggag
cacgtgtatggtgaaacgccatggtatacgtcaaacggtctacgcttaacgttcagtccg
cgcgacttcatccaggtaaacgacaacgtgaaccagcaaatggtcgcgacggcgctgtcc
tggctcgatgttcagccagacgatcgcgtgctcgacctgttctgcggaatgggtaacttt
acgctcccgctggcccagcgtgccgctgaggtggtgggggtcgaaggggtacctgctctg
gttgagaaagggctgcagaacgcggcgttgaatcatttacacaatgtgaccttctttcac
gaaaatctggaggaagatgttacccggcaaacgtgggcgcagcacggctttgataaggtc
ctgctcgatccggcgcgtgccggtgcgccaggcgtaatgcagcacataatcaaacttgca
ccgaaacgtgtggtctatgtttcctgtaacccggcaacgcttgctcgagacagcgaggcg
ctattgcaggcgggttatcggattgggcgtctggcgatgctggatatgttcccgcacaca
gggcacctggagtcgatggtgttgttcgagcacatttaa
DBGET
integrated database retrieval system
