Yokenella regensburgei: HEC60_13955
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Entry
HEC60_13955 CDS
T06519
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
yre
Yokenella regensburgei
Pathway
yre03410
Base excision repair
yre03430
Mismatch repair
yre03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
yre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HEC60_13955 (recJ)
03430 Mismatch repair
HEC60_13955 (recJ)
03440 Homologous recombination
HEC60_13955 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yre03400
]
HEC60_13955 (recJ)
DNA repair and recombination proteins [BR:
yre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HEC60_13955 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HEC60_13955 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HEC60_13955 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QIU90331
LinkDB
All DBs
Position
complement(2886677..2888410)
Genome browser
AA seq
577 aa
AA seq
DB search
MKSQIQLRRREVDEAVVLPESLPPLLRRLYASRGVKSASDLERSVKAMLPWQQLSGVEKA
VEILHNAFREGLRIVVVGDFDADGATSTALSVLGMRALGCQNIAYLVPNRFEDGYGLSPE
VVEQAHARGAQLIMTVDNGISSHAGVDRAHALGIPVLVTDHHLPGDTLPAAEAIINPNLN
DCDFPSKSLAGVGVAFYLMLALRTHLRDNGWFEERGITPPNLAELLDLVALGTVADVVPL
DANNRILIWQGLSRIRAGKCRPGIKALLEVSNREAQKLAASDLGFALGPRLNAAGRLDDM
SVGVALLLCDNPGEARMLANELDALNQTRKEIEQGMQAEALTLCEKLERSRDTLPGGLAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLFP
GLIIKFGGHAMAAGLSLEEARFDEFQQRFGELVTDWLDPSLLQGEVVSDGPLSPNEMTLE
IAQMLRDAGPWGQMFPEPLFDGRFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTA
CWPDNGVREVELAYKLDINEFRGNRSVQLIIDNIWPV
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcacagatacaacttcgtcggcgagaagtcgacgaggcggtggtgctacctgag
tcactgccgccgcttttgcgcagactttacgccagtcggggcgtgaagagcgcaagcgat
cttgagcgcagcgtgaaggcgatgctgccctggcagcagcttagcggtgtggaaaaggcc
gttgagatcctgcataacgccttccgggaagggctgcgtattgtcgtggtgggcgatttc
gacgccgatggcgcaaccagtaccgcgctcagcgtgctcggcatgcgtgcattgggttgc
cagaacatcgcctatctggtgccgaaccgttttgaagacggctatggccttagcccggaa
gtggttgaacaggcccacgctcgcggcgcacagctcattatgaccgtggataacggcatc
tcttcccacgcgggagtggatcgtgcgcatgcgctcggcatcccggtgctggtgaccgat
caccacctgccgggtgacacgctgcccgctgccgaagccatcattaacccaaatctgaat
gattgcgactttccgtcgaaatcgctggcgggcgtgggggtggcgttttacctgatgctg
gcgcttcgtacccacctgcgtgacaacggttggttcgaggagcgaggcattacgccgccg
aatctggcggagctgctcgacctggttgcgcttggtaccgtggcggacgtagtaccgctt
gatgctaacaatcgcattcttatctggcaggggctcagtcggattcgtgccgggaagtgc
cgtcccggtatcaaagcgctgcttgaagtgtctaatcgtgaagcgcagaagctggcggca
agcgatcttggctttgcgcttgggccgcgtctgaatgctgctggccggctggatgatatg
tccgttggcgtggcgctgctgctttgtgataacccgggtgaagcgcgaatgctcgccaac
gagctcgatgcgctgaatcaaacgcgcaaagagattgaacaggggatgcaggcagaagcg
ctgacgctttgcgagaagctcgagcgctctcgggataccctcccggggggcctcgccatg
tatcaccccgaatggcaccagggcgtggtcggtattctggcttcgcggataaaagagcgt
ttccatcgtccggtcattgcttttgcccctgcgggagacggtacgttaaaaggctccggt
cgttctattcagggcctgcatatgcgagatgctctggagcgccttgatacgctgtttccc
ggtttgataatcaagtttggtggccatgccatggcggcggggctgtcgcttgaagaggct
cgttttgacgagtttcagcaacgttttggtgagctggtcactgactggctggatccgtcg
ctgctacagggtgaagtagtctctgacgggccgttgtcacccaatgagatgacgctggaa
atcgctcaaatgctgcgcgatgctggcccgtggggacaaatgtttccagagccgttgttc
gacgggcgttttcggctgttgcagcagcgcctggttggagagcgtcatttaaaagtgatg
gtagagccggttggcggcgggccattgctcgacggcatcgcgtttaatatcgacacggcc
tgctggccagataacggtgtgcgtgaggttgagctggcttataagcttgatatcaacgaa
ttccgtggcaaccgaagtgtacagctgattattgacaatatttggcctgtctag
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