Yokenella regensburgei: HEC60_15265
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Entry
HEC60_15265 CDS
T06519
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
yre
Yokenella regensburgei
Pathway
yre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HEC60_15265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yre03019
]
HEC60_15265
03009 Ribosome biogenesis [BR:
yre03009
]
HEC60_15265
Enzymes [BR:
yre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HEC60_15265
Messenger RNA biogenesis [BR:
yre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HEC60_15265
Ribosome biogenesis [BR:
yre03009
]
Prokaryotic type
rRNA helicases
HEC60_15265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QIU90571
LinkDB
All DBs
Position
complement(3158105..3160033)
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AA seq
642 aa
AA seq
DB search
MAEFETTFADLGLKPTILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAF
SLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAEIPDG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQSLREQTLDRLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDTESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERLMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPTAEGEEMD
VETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRFERRGDRNDRGPRGDRPERGGE
DRPRRERRDVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIEL
PKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPRPDRGGERRGGGRGFGGERREGGREGGR
GGEGRRFSGERREGHRGQRRDDNGAPRAPRRDDNGSSRRRDA
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctgggtctgaaaccaactatccttgaagca
ctcaacgatctgggttacgaaaaaccatccccgatccaggcagagtgtatcccgcatctg
ctgggcggccgcgacgttctgggtatggcccagaccgggagcggaaaaactgcagcgttc
tctcttccgctgcttaacaatcttgatccggaactgaaagcaccacaaattctggtgctg
gcaccgacccgcgaactggcggttcaggttgctgaagcaatgacggacttctctaaacat
atgcgcggcgtaaacgtggttgccctgtacggcggccagcgttatgacgtgcagctgcgc
gcactgcgccaggggccgcagatcgtcgtcggtacgccgggtcgtctgctggatcacctg
aaacgtggcaccctggatctctccaaactgagcggtctggtgctggatgaagctgacgaa
atgctgcgcatgggcttcatcgaagacgtagaaaccattatggcggagatcccggacggt
catcagaccgcactgttctctgcaactatgccggaagctatccgtcgcattacccgccgc
ttcatgaaagagccgcaggaagtgcgcattcagtcaagcgtaaccactcgcccggacatc
agccagagctactggactgtgtacggcatgcgtaaaaacgaagcgctggttcgtttcctg
gaagcagaagattttgatgcggcgattatcttcgttcgtaccaaaaacgcgaccctggaa
gtggctgaagccctggagcgtagcggttacaacagcgctgcactgaacggtgacatgaac
cagtccctgcgtgagcagaccctggatcgtctgaaagacggtcgtctggacatcctgatc
gcaaccgacgttgcggcacgtggcctggacgttgagcgtatcagcctggtcgttaactac
gatatcccgatggataccgaatcttacgttcaccgtatcggtcgtaccggccgtgcgggt
cgtgctggccgtgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgtaacatc
gaacgtctgatgaagctgaccattccggaagtagaactgccgaacgcagaactgctgggc
aaacgccgcctggagaaattcgccgctaaagttcagcagcagctggaaagcagcgatctt
gaccagtaccgtgcactgctcgcgaaaattcagccgaccgctgaaggcgaagagatggat
gtggaaacgctggctgccgctctgctgaagatggcacagggcgaacgtccgctgatcctg
ccgccggatgcaccgatgcgtccgaagcgtgagttccgtgaccgtgacgatcgtttcgaa
cgtcgtggcgatcgtaacgatcgtggtccgcgtggcgatcgtccggagcgtggtggtgaa
gaccgtccgcgtcgcgagcgtcgtgacgttggcgatatggaactgtaccgcattgaagtg
ggccgtgatgatggtgttgaagttcgtcacatcgtgggcgcgattgccaacgaaggcgac
atcagcagccgttacatcggtaacatcaagctgtttggctctcactccactatcgaactg
ccgaaaggtatgccgggcgaagtactgcagcactttactcgcacccgcatcctgaacaaa
ccgatgaacatgcagctgctgggcgacgcgcaaccgcgtccggaccgtggcggtgagcgt
cgtggcggtggtcgtggtttcggtggcgagcgtcgtgaaggcggccgtgaaggcggtcgt
ggtggcgaaggtcgtcgcttctccggcgaacgtcgcgaaggccatcgcggtcagcgtcgt
gatgacaatggtgctccgcgcgctccgcgtcgtgatgacaacggcagcagccgtcgtcgt
gacgcataa
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