Yokenella regensburgei: HEC60_15740
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Entry
HEC60_15740 CDS
T06519
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
yre
Yokenella regensburgei
Brite
KEGG Orthology (KO) [BR:
yre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yre03019
]
HEC60_15740 (csrD)
Messenger RNA biogenesis [BR:
yre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HEC60_15740 (csrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
GDPD
DUF418
Motif
Other DBs
NCBI-ProteinID:
QIU90660
LinkDB
All DBs
Position
complement(3253181..3255121)
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AA seq
646 aa
AA seq
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MRLTTKFSAFVTLLVGLAIFVTLVGCSLSFYNGIQLKLQKRVQAVATVLDNRLITTSFDK
LDTQLDELLVPVDIVRVDFIVDHKSIFNHSLGSSYRPAGSSYQFRNIDVESVKHPGMTIR
MVYQDPMVNYFHSLSTTAPLTVAIAFMVMVIFFAVRWLRRQLSGQELLDLRSARILNGER
GPQVRGSVHEWPARTSSALDKLLSEIQFASDQRSRMDTLIRSYAAQDTRTGLNNRLFFDN
QLVTLLEDQERVGSHGIVMMIRLPDFDLLRDNWGQTAAEEYLFTIINLLSTFMLRYPGAL
LARYHRSDFAVLLPHRTLKEADSIASQLLKAVDALPPTRIRDREDMMHIGICAWRSGQTK
DQVMEHAEAATRNAVLQGSNSWAVYDDTLPEKGRGNVRWRTMIEQMLSRGGPRFYQKPAV
TRNGHVHHRELMCRLYDGNEEVIAAEYMPMVLQFGLSEEYDRLQITRLLPFLSFWPEENL
ALQVTVESLIRPRFQRWLRDTLMQCEKSQRKRIIFELAEADVCQHISRLQPVMRLINALG
VRAAVIQAGLTLVSTDWIKVLNVEIIKLHPGLVRNIEKRSENQLLVQSLVEACKGTETQV
YATGLRSRSEWLVLTECGVTGGQGDFFAGSQPLDTSVKKYSQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaacgacgaaattttccgcttttgtgacgctgctggtcggtctggccattttt
gtcacgctggtcgggtgctcgctcagcttttacaacggtattcagctcaagctgcaaaaa
agggtccaggcggttgccaccgtgctggataaccgtctgatcaccacctctttcgataaa
ctggatacccagcttgatgagctactggttccggttgatatcgtccgcgttgacttcatt
gttgatcataagtcgattttcaatcattcactcggcagcagctatcgcccggcggggagc
agctatcagtttcgcaatattgacgttgagtcagtaaaacatcctggaatgaccatccgt
atggtgtatcaggacccgatggtgaactatttccactcattgtcgactacggcgccgctc
accgttgcgattgcctttatggtgatggttatcttttttgccgtacgttggctgcgtcgt
cagctttcaggacaagagctgctggatctgcgttcggccaggatccttaatggtgagcgc
ggtccgcaggtgcgagggtcggtacacgaatggcctgcacgcaccagtagtgcgctggat
aaattactgtcagaaatccagtttgccagcgatcagcgcagccgcatggatacgctcatt
cgttcctacgccgcgcaggatacccgtaccgggctcaacaatcgtctgttcttcgataac
caacttgtgacgctgctggaagaccaggagcgggttggctcccacggcattgtgatgatg
attcgtctgccagacttcgatctgctgcgcgataactgggggcaaactgccgccgaagag
tacctcttcacaattattaatctcctctcgacttttatgctgcgttaccccggtgcgttg
ctggcgcgctatcaccgcagcgacttcgccgtactgcttccacaccgtacgctgaaagaa
gcggacagcattgcgagccagttattgaaagcggttgatgcgctaccaccaacccggatc
cgcgatcgcgaagatatgatgcatatcggcatttgcgcctggcgcagcgggcagaccaaa
gatcaggtgatggagcatgcagaggccgcaacccgtaatgccgttctgcagggaagcaac
agctgggccgtgtacgacgacacgctgccggagaaggggcgtggcaacgtgcgctggcgt
acgatgatcgagcaaatgctaagccgcggaggtccacgcttctatcaaaaacctgcggtg
acgcgtaacggtcatgtgcatcatcgcgagctgatgtgccgcctgtacgatgggaacgaa
gaggtgattgccgccgaatatatgccgatggttttgcagtttggcctgtcagaagagtac
gacagactacagattacgcgtttgctgccgttcttatctttctggccggaagaaaatctg
gctttacaggtgacggtcgaatcgctgatccgcccgcgattccagcgctggctgcgggat
acgttgatgcaatgtgaaaaatcgcaacgcaagcgcattatttttgaacttgcagaggcg
gatgtttgtcaacatatcagccgtttacaaccggtcatgcgtttaattaacgcgctgggg
gtacgcgccgctgtgattcaggcgggtttgacgctggtcagtaccgactggatcaaggta
ctgaacgttgagattatcaagctacacccagggcttgtgcgcaatatcgaaaagcgcagt
gaaaaccagctgttggttcaaagcctggtggaggcctgtaaggggaccgaaacgcaggtt
tatgccacaggattacgcagccgaagcgagtggctggtactgacggagtgcggtgtgact
ggcggtcagggcgatttttttgcgggctcacagccacttgacaccagtgtgaaaaaatat
tcgcaaagatactctgtttaa
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