Yokenella regensburgei: HEC60_18120
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Entry
HEC60_18120 CDS
T06519
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
yre
Yokenella regensburgei
Pathway
yre03030
DNA replication
yre03410
Base excision repair
yre03420
Nucleotide excision repair
yre03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
yre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HEC60_18120 (polA)
03410 Base excision repair
HEC60_18120 (polA)
03420 Nucleotide excision repair
HEC60_18120 (polA)
03440 Homologous recombination
HEC60_18120 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yre03032
]
HEC60_18120 (polA)
03400 DNA repair and recombination proteins [BR:
yre03400
]
HEC60_18120 (polA)
Enzymes [BR:
yre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HEC60_18120 (polA)
DNA replication proteins [BR:
yre03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HEC60_18120 (polA)
DNA repair and recombination proteins [BR:
yre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
HEC60_18120 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HEC60_18120 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH
Prok-E2_E
HHH_5
Motif
Other DBs
NCBI-ProteinID:
QIU91098
LinkDB
All DBs
Position
3748868..3751654
Genome browser
AA seq
928 aa
AA seq
DB search
MVQIPENPLILVDGSSYLYRAYHAFPPLTNGAGEPTGAMYGVLNMLRSLILQYQPSHAAV
VFDAKGKTFRDELFEDYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLMAVSGVEADDVIGT
LAREAEKAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVTKYGVPPELIIDFL
ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLEQSK
DLAYLSYKLATIKTDVELELTCDQLEVQAPAADELLGLFRKYEFKRWITDLEAGKWMQAK
GAKPAAKPVETVVIDEEPETPAATLSAENYVTILDEETLKSWIKKLETAPLFAFDTETDS
LDNISANMVGLSFAIEPGVAAYVPVAHDYLDAPDQISRERVLELLKPLLEDEKRLKVGQN
LKYDRGILQNYGIELRGIAFDTMLESYTLDSVAGRHDMDSLSDRWLKHKTITFEEIAGKG
KNQLTFNQIDLEQAGRYAAEDADVTLQLHLKMWPTLQKHEGPLRIFNEIEMPLVPVLSRV
ERNGVKIDPAVLHAHSQEIAKRLVELEQKAYEIAGEEFNLSSPKQLQTILFEKQGIKPLK
KTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYH
QAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRD
KGLLNAFAEGKDIHRATAAEVFGLPLENVTSEQRRSAKAINFGLIYGMSAFGLSRQLNIP
RKESQKYMDLYFERYPGVLDYMERTRAQAKDNGYVETLDGRRLYLPDIKSSNAARRAGAE
RAAINAPMQGTAADIIKRAMIAVDAWLRTEQPRVRMIMQVHDELVFEVHKDDLDAVSKKI
HELMENSTTLDVPLLVEVGSGDNWDQAH
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggttcagatcccagaaaaccccctcattcttgttgatggctcctcttatctctatcgg
gcgtatcatgcgtttcccccgctgaccaacggcgcgggcgagccaaccggcgcgatgtat
ggcgtgctaaatatgctccgcagcctgatcctgcaataccagccttcacacgctgccgtg
gtgtttgatgcgaagggaaaaaccttccgtgacgaactgtttgaggattacaaatcgcac
cgtccgccgatgccggacgatctgcgtgcgcaaattgaaccactgcacgcgatggtgaaa
gcgatgggcttacccttgatggcggtctctggcgtagaagcggacgatgttatcggtacc
ctggcgcgagaagccgagaaggcgggccgtccggtgcttatcagtaccggtgataaagac
atggctcagctggtgacgccaggtattacgctgattaataccatgaccaatactatcctc
gggcctgacgaggtagtgacaaagtacggtgtaccgccggagctgattatcgatttcctc
gcgctgatgggtgactcctccgataacatccctggtgtgccgggcgttggtgagaaaacc
gcccaggcgctgctgcaagggctgggtggccttgatacgctgtatgccgaacccgagaaa
atcgccggtctgaccttccgcggtgctaaaaccatggccgcgaagcttgagcaaagcaaa
gacctcgcttatctctcttataagctcgccacgatcaaaacagacgttgagctggagctc
acctgcgatcagctggaggttcaggctccggcggcagacgagctgctggggcttttcagg
aagtacgaatttaagcgctggataaccgatcttgaagccggtaaatggatgcaggcgaaa
ggcgctaaaccggcggctaagccggtagaaaccgtcgttattgacgaagagcccgaaaca
cctgctgcgacgctctctgccgaaaactacgtcaccattctggatgaagaaacgctgaag
tcgtggatcaagaagctggaaacagcgccgctgtttgcgtttgatactgagaccgacagc
ctcgataacatcagcgccaatatggtcgggctctcttttgctatcgaacccggcgtggcg
gcatatgtcccggtggcacacgattatctcgacgccccggatcaaatctcccgtgaacgt
gtgctggagctgttaaaaccgctgctggaagatgaaaaacgcctgaaggtcggccagaac
ctgaaatacgatcgcggtattctgcagaattatggcattgagctacgtggcattgccttc
gacacgatgctcgaatcctacacgctggatagcgtagctggccgccacgacatggacagc
ctctctgaccgctggcttaagcataaaactatcacctttgaagagattgccggcaaaggg
aagaaccaactgacttttaaccagattgaccttgagcaggccgggcgctatgcggcggaa
gatgctgacgtcactttgcagctgcatctgaagatgtggccgacgctacagaagcacgag
ggtccactgcgaattttcaacgagattgaaatgccgctggtgcctgtactgtcgcgcgtt
gagcgcaacggcgtaaaaattgaccccgcggtactgcatgcccactcgcaggaaattgcc
aagcgtctggttgaactggagcagaaggcctatgagatcgccggagaagagtttaacctc
tcttcgccgaagcagctgcaaaccattctgtttgaaaaacagggtatcaagccgctgaag
aaaaccccgggcggcgcgccgtccacctcggaagaggtgctggaagagctggcgctggat
tacccgctgccgaaggttatcctcgagtatcgtgggcttgccaagcttaagtcgacctac
accgacaaactgccgctgatgattaacccgaaaaccgggcgtgtacatacctcctatcac
caggcggtgactgccacgggacgtctgtcttcaaccgatccgaacctgcaaaatattcct
gtacgtaatgaggaaggacgtcgtattcgtcaggcgtttattgcgccggaagattatctg
attgtatctgccgactactcacagatcgaactgcgcatcatggcgcatctgtcgcgtgat
aaaggcctgctgaatgcttttgccgagggtaaagatatccaccgggctaccgccgccgaa
gtatttgggctgccgcttgagaacgtcaccagcgaacagcgtcgcagcgcgaaggcgatt
aactttggcctgatttacggtatgagtgcgttcgggctctcccgccagctcaatattccg
cgtaaagagtcgcagaagtacatggatctctattttgagcgctatcctggcgtactggac
tatatggaacgtactcgcgcgcaggcaaaagataatggctatgttgaaacgctcgatggt
cgccgactgtatcttccggacatcaaatccagcaatgccgcacgccgtgcgggcgctgag
cgtgctgcgatcaacgccccgatgcaggggacggctgctgatatcatcaaacgtgcgatg
atcgcggtggatgcctggctacgaacggaacagccgcgagtgcgcatgatcatgcaggtg
cacgatgaactggtgtttgaagtgcataaagacgatctggacgcggtgtcgaagaaaatc
catgaactgatggaaaacagcaccacgctggacgtgcctctgctggtggaagtcggcagt
ggagacaactgggatcaggcgcattaa
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