Yokenella regensburgei: HEC60_18835
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Entry
HEC60_18835 CDS
T06519
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
yre
Yokenella regensburgei
Pathway
yre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HEC60_18835 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yre03019
]
HEC60_18835 (recQ)
03400 DNA repair and recombination proteins [BR:
yre03400
]
HEC60_18835 (recQ)
Enzymes [BR:
yre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HEC60_18835 (recQ)
Messenger RNA biogenesis [BR:
yre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HEC60_18835 (recQ)
DNA repair and recombination proteins [BR:
yre03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HEC60_18835 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
QIU91223
LinkDB
All DBs
Position
3905455..3907284
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AA seq
609 aa
AA seq
DB search
MAQAEVFNQQSLAKQVLQETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQIP
ALVLDGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQQEVMAGCRTGKIRLLY
IAPERLMLDNFLDNLSHWNPVMLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMAL
TATADDTTRLDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSRGISAGAYHAGLENHIRAEVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAGQL
LDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGLEDARKAL
STIYRVNQRFGMGYVVEVLRGANNQRIRELGHDKLPVYGIGREKSHEHWVSVIRQLIHLG
FATQNIALHSALQLTEAARPVLRGDVPLALAVPRIIALKPRVMQKAAVGNYDRKLFAKLR
KLRKAIADEENIPPYVVFNDATLIEMAEQMPLSASDMLSVNGVGMRKLERFGKEFMALIR
SHVDGDDEE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtggcacaggcggaagtatttaatcaacaatcgctggcgaagcaggttttacaggagacc
ttcggctaccagcagttccgcccgggccaggaaaccatcattgagaccgtgctggaagga
cgcgactgtctggtggtcatgcccaccggaggcggtaaatcgctttgctaccagatccca
gcactggtgctcgatggcctgacggtagtggtttccccgctgatttcgctgatgaaagac
caggtcgatcagctactggccaacggtgtggctgcggcgtgcctcaactcgactcagacc
cgtgagcagcagcaggaagtcatggccggatgtcggacaggcaaaattcgtctgctgtac
attgcacccgagcgtctgatgcttgataacttcctcgataacctcagccactggaatccg
gtgatgctggcggtggacgaggcgcactgtatttctcagtgggggcatgatttccgcccg
gaatatgccgcactcggccagctacgccagcgcttcccggcgctgccgtttatggcgctg
accgccaccgcagacgacactacccggctggatattgtccgcctgttggggctcaacgat
ccgctgattcagataagcagcttcgatcgcccgaacatccgctatatgctgatggagaag
tttaaaccgctggatcagctcatgcgctacgtgcaggagcagcgcggtaaatcgggcatt
atctactgcaacagccgcgccaaagtggaagataccgctgcccgcctgcaaagccgtggg
atcagcgctggggcttaccatgccgggcttgaaaatcacattcgtgccgaggtgcaggag
aaattccagcgcgacgacctgcaaattgttgtggcgaccgtggcgttcgggatggggatc
aacaagcccaacgtgcgcttcgtggtgcacttcgatattccgcgcaatattgaatcttac
tatcaggaaaccggccgtgccgggcgtgacggcctgccggcagaagcgatgctgttctac
gatccggccgatatggcgtggctgcggcgctgcctggaggagaaacctgccgggcaactg
ctggatattgaacgtcacaaactgaatgcgatgggcgctttcgcggaggcgcaaacctgc
cgtcgtctggtgttgctgaactactttggcgaggggcggcaggagccgtgcggcaactgc
gatatctgccttgatccaccaaaacagtacgacggtctggaagatgcgcgcaaagcgctg
tcgaccatttatcgcgtcaaccaacgcttcgggatggggtacgtggtggaagtgctgcgc
ggggcaaacaatcagcgcattcgcgagctgggccacgacaaactaccggtgtacggtatc
gggcgtgaaaaaagccacgaacactgggtgagcgttatccgtcagctgatccatctcggt
ttcgcgacgcagaacattgccctccattcagccctgcagctgaccgaagccgcgcggccg
gtgctgcgcggcgatgtcccattggcgctcgcggtaccgcgtattatcgctctgaagccg
cgcgtgatgcagaaagcggcggtgggcaactacgaccgcaagctcttcgccaagctgcgt
aaactgcgcaaagctatcgccgatgaagagaacatcccgccttacgtggtgttcaacgac
gcaacgcttatcgaaatggccgagcagatgccgctttcggcgagcgacatgctcagcgtt
aacggggtcgggatgcgcaagctggagcgctttggtaaagagtttatggcgcttatccgc
tcgcatgttgacggtgacgacgaagagtag
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