Yokenella regensburgei: HEC60_19880
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Entry
HEC60_19880 CDS
T06519
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
yre
Yokenella regensburgei
Pathway
yre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HEC60_19880 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yre03019
]
HEC60_19880 (rnr)
03016 Transfer RNA biogenesis [BR:
yre03016
]
HEC60_19880 (rnr)
Enzymes [BR:
yre01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HEC60_19880 (rnr)
Messenger RNA biogenesis [BR:
yre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HEC60_19880 (rnr)
Transfer RNA biogenesis [BR:
yre03016
]
Prokaryotic type
tRNA degradation factors
HEC60_19880 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
WHD_RNase_R
S1
RNase_II_C_S1
Rho_RNA_bind
MetOD2
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
QIU91407
LinkDB
All DBs
Position
4120087..4122528
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AA seq
813 aa
AA seq
DB search
MSQDPFLEREAEKYTNPIPSREFILDHISKREKPVSRDELAVELKIEGEEQLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGIVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYVWPPA
VEKQIEGLKEQVPESAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRSGTALDNEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
SKGRLTGFKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKVLDQA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKANEP
ALFRIHDKPSSDAITAFRSVLAELGLELPGGNKPEPRDYAELLTSIADRPDHEMLQTMLL
RSMKQAVYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRGIKYLLAKEQGHKGNSTETG
GWHYSMEEMLQLGAHCSMTERRADEATREVSDWLKCDFMQDQVGNVFPGVIASVTGFGFF
VRLNDLFIDGLVHVSTLDNDYYRFDQIGQRLIGESGGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERTPRNVGKTVREKAKKAGSGKPGGNRRQAGKKVNFEPDSAFRGEKGKAKPPK
AKKAKNVKKPSAKTQKIAAATKAKRAAKKKTAE
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttcctggaacgcgaagcagaaaaatataccaatcctatcccaagc
cgggaatttatcctcgaccacatatccaaacgtgaaaaaccggtcagccgcgatgagctg
gcggtcgagctaaaaattgaaggcgaagagcagctggaagcgctgcgtcgccgtctgcgc
gccatggagcgcgacggacaactggtctttacccgccgccagtgctacgcgctgccggag
cgtcttgacctgctgaaaggcattgtcattggccatcgcgatggctatggcttcctgcgc
gtggaaggtcgtaaagatgacctttacctttccagcgagcagatgaaaacctgcattcac
ggcgaccaggtgctggcgcagccgttaggggcagaccgcaagggccgccgcgaagcgcgc
atcgtgcgcgtactggtgcctaaaaccagccagattgttggccgttactttaccgatgcc
ggcgtgggctttgtcgttcctgacgacagccgcctgagcttcgatatcctcattccgccg
gaagaggtgatgggcgcgcgtatgggcttcgtggtggtggttgaactcacccagcgccca
acgcgccgcaccaaagcggtgggtaaaatcgtcgaagtgcttggcgataatatgggcacc
ggcatggccgtggatatggcgctgcgcacccatgaaattccttatgtctggccgccagcg
gtcgagaagcagattgagggcctgaaagagcaggtacctgagtcggcgaaagccggacgc
gttgatttacgcgacctgccgctggtcaccatcgacggcgaagacgcccgcgacttcgat
gacgcggtctactgcgaaaaaaaacgcggcggcggctggcgcctgtgggttgcgattgct
gacgtaagctattacgttcgctcgggtacggcgcttgataacgaagcgcgcagtcgcggt
acgtccgtgtacttcccgtcgcaggttgtcccgatgctgccagaagtgctctctaacggc
ctgtgttctctgaacccgcaggttgaccgtctgtgcatggtctgcgagatgactatctcg
tcgaagggtcgtctgaccggctttaaattctacgaagcggtgatgagctcccatgcccgt
ctgacctataccaaggtctggcatatgctgcagggcgatcaggatctgcgtgagcagtat
gcgccgctggtgaagcatatcgaagagctgcacaacctgtataaagtgctggatcaagcg
cgcgaagagcgcggcggcatttcgtttgagagcgaagaggcgaagtttatcttcaacgct
gaacgccgaatcgaacgtattgagcaaacccagcgtaacgacgcgcacaaactgattgaa
gagtgcatgatcctggctaacatctcggcggcacgttttgtcgagaaggccaacgaacct
gcgctgttccgtattcacgataaaccgagcagcgatgcgattaccgcgttccgctccgta
ctcgcagagctgggccttgagctgccgggtggcaacaagccggagccgcgcgactacgcc
gagctgctgacctccatcgccgatcgtccggatcatgaaatgctgcagactatgctgctg
cgctccatgaagcaggcggtctacgatccggaaaaccgtggtcactttggcctggcgctg
cagtcgtatgcgcactttacttcgcctatccgccgttacccggacctgtcgctgcatcgc
ggcattaagtatctgctggcgaaagagcaggggcacaagggcaacagcaccgaaaccggc
ggctggcactacagcatggaagagatgctgcagcttggcgcgcattgctcgatgaccgag
cgccgcgccgatgaagcgacccgtgaagtttctgactggctgaagtgtgacttcatgcag
gatcaggtgggcaacgtcttcccaggcgtgattgcaagcgttaccggctttggtttcttt
gttcgtctgaacgatctgtttatcgatggcctggtgcacgtctctacgcttgataacgac
tactaccgcttcgaccagattggccagcgtctgattggtgaatccggcggtcagacctac
cgtctgggcgaccgcgtggaagtccgtgtagaagcggtcaacatggatgagcgtaaaatt
gacttctcgctgatctcaagcgagcgtacgccgcgcaacgttggtaaaaccgtgcgcgag
aaggcgaagaaagccggttccggcaagccgggcggtaaccgtcgtcaggcgggaaaaaag
gtcaacttcgagccagacagcgcgttccgtggcgaaaaaggcaaggccaaaccaccgaag
gcgaaaaaagcgaagaacgtgaaaaaaccatcggcgaaaacgcagaaaatcgcggctgcc
accaaggctaaacgtgcggcgaagaagaaaaccgccgagtaa
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