Yokenella regensburgei: HEC60_22060
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Entry
HEC60_22060 CDS
T06519
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
yre
Yokenella regensburgei
Pathway
yre03030
DNA replication
yre03430
Mismatch repair
yre03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
yre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HEC60_22060 (dnaE)
03430 Mismatch repair
HEC60_22060 (dnaE)
03440 Homologous recombination
HEC60_22060 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yre03032
]
HEC60_22060 (dnaE)
03400 DNA repair and recombination proteins [BR:
yre03400
]
HEC60_22060 (dnaE)
Enzymes [BR:
yre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HEC60_22060 (dnaE)
DNA replication proteins [BR:
yre03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HEC60_22060 (dnaE)
DNA repair and recombination proteins [BR:
yre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HEC60_22060 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QIU91813
LinkDB
All DBs
Position
4592459..4595941
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA
GLKPIVGADFHVQCDLLGDEFSQLTVLAANNVGYQNLTLLISRAYQRGYGASGPWIDRDW
LVELQEGLILLSGARMGDVGKALLRGNMPLVEQLVSFYETHFPDRYYLELIRTGRADEES
YLHAAVDLAQARGLPVVATNDVRFIDSGDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM
RSEDEMCELFADLPEALENSVEIAKRCNVTVRLGEYFLPQFPTGEMSTEDFLVMKSKEGL
EERLEFLFPDPQVRAERRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLAKAFEAEPQ
LPEIYAADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGMHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKQGEPPLDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKKPEEM
AKQRGTFEEGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIEARNNGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLNDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQTVLDGERETLGLY
LTGHPITQYLKEIERYVGGCRLKDMHPTDRGKVTTAAGLVIASRVMVTKRGNRIGICTLD
DRSGRLEVMLFTDALDKYQHLLENDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD
RLLNDLRSLIGTEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaccacgtttcgtacacctgcgggtgcacagtgactactccatgattgatggg
ctggcgaaaaccgggccgctggtaaaaaaggcggccgcactcggtatgcctgcgctggcg
atcaccgatttcaccaacctgtgcggtctggtgaagttctacggagcgggacacggtgct
ggtcttaaacccatcgttggcgctgacttccacgtgcagtgcgatctgctgggtgatgag
ttttctcaactgacggtgcttgctgccaataacgtcggctatcagaacctgacgctgctg
atttcccgcgcttaccagcgcggttatggtgcttctggaccgtggattgaccgcgactgg
ctggtagagcttcaggaaggactgatcctgttgtctggggcccgcatgggcgacgtcggt
aaagcgctgctgcgtggcaatatgccgctggtagagcagctcgtctcgttctatgagaca
catttccctgatcgctactatcttgaacttatccgtaccggtcgtgccgatgaagagagc
tatctgcatgctgctgtcgacctggcacaggcgcgcggtctgccggtggtggccacgaac
gacgttcgttttattgattcaggcgacttcgacgcgcatgagatccgcgttgctatccac
gatggatttacgctcgacgaccctaagcgtccgcgtaactattcgccgcaacaatatatg
cgcagcgaagacgagatgtgcgagctgtttgccgacctccctgaggcgctggaaaacagc
gttgagatagccaagcgttgtaacgtcaccgtgcgccttggcgaatacttcctgccgcag
ttcccgaccggtgaaatgagcaccgaagacttcctcgtcatgaagtcaaaagaggggctg
gaggagcgccttgagttcctgttcccggatccacaggtgcgggcggaacgtcggccggaa
tacgacgagcgcctggatatcgaactgaaggtgataaaccagatggggttcccgggctac
ttcctcatcgtaatggaatttatccagtggtcgaaggacaacggcgtgccggtagggccg
gggcgtggctccggtgcgggctcgcttgtcgcctacgcgctcaaaatcaccgacctcgat
ccgctggaatttgacctgctgttcgaacgtttccttaacccggaacgtgtctcgatgcct
gacttcgacgttgacttctgcatggagaaacgtgaccaggtgattgaacacgtggcggac
atgtacggccgtgatgcggtatcgcagattatcacctttggtaccatggcggcgaaagcg
gttatccgcgacgtaggccgcgtgctgggtcacccgtatggcttcgttgaccgcatctct
aagctggtgccgcctgacccgggtatgacgctggcgaaagcgtttgaagcggagccgcag
ctgccagaaatttacgccgccgatgaagaggttaaagcccttatcgatatggcgcgtaag
ctcgaaggcgtcacgcgtaacgccggtaagcacgccggtggggtggttatcgccccgacc
aaaatcaccgattttgcgccgttgtactgcgacgaagcggggatgcacccggttacccag
tttgataaaaacgacgtggaatacgcggggctggtgaagttcgacttcctcggcttgcgt
acgctcaccatcatcaactgggcgcttgagatgatcaacgcccgtcgtgagaagcagggt
gaaccgcctctcgacattgcggcgatcccgctcgacgataagaaaagcttcgacatgctg
cagcgctcggaaaccaccgcggtattccagcttgaatcgcgtggcatgaaagacctcatt
aagcgtctgcagcctgactgcttcgaagatatgatagccctggtggccctgttccgtccg
gggccgctgcagtcggggatggtagataactttatcgaccgtaagcacggccgcgaagag
atttcctacccggacgtacagtggcagcatgagtgtctgaaaccggtactggagccgacc
tacggcattatcctgtaccaggaacaggttatgcagattgcccaggagctctctggctat
acgctcggcggcgcggatatgctgcgtcgtgcgatgggtaagaaaaagccggaagagatg
gccaagcagcgcggcaccttcgaggaaggggcgaaaaagaacggcgttgacggcgaactg
gcgatgaaaatcttcgatctggtggaaaaattcgccgggtacgggtttaacaaatcgcac
tccgcagcctatgcgctggtctcctaccagacgctgtggctgaaggcgcactatccggcg
gagttcatggcggcggtaatgactgccgatatggacaacaccgagaaggtggttggcctg
gtggatgaatgctggcgcatggggcttaaaattctgccgccagatatcaactccgggctg
tatcatttccacgttaacgacgacggtgaaattgtttacggtatcggcgcgatcaaaggc
gtcggtgaagggccgattgaagctatcatcgaggcccgtaataatggcggctatttccgc
gagctgtttgacctgtgcgcgcggaccgacattaaaaagctgaaccgtcgggtactggaa
aaactgattatgtccggggcgtttgaccgccttgggccgcaccgtgcagcactgatgaac
tcgctgaacgatgctttaaaggcggcggatcagcacgccaaagctgaggcgatagggcag
gcagatatgttcggcgttctggcggaagagccggagcagattgaacaatcctatgccagc
tgtcaaccgtggccagaacaaacggtactggatggtgaaagggaaacgctggggctgtat
ttgaccgggcacccgattacccagtatctgaaagaaattgagcgctatgtcggaggctgt
aggctgaaagacatgcatccgaccgatcgtggtaaagtcaccacggcggcggggctcgtg
attgcctcgagggttatggtcaccaaacgcggcaatcgtatcggcatctgtacgctggat
gaccgttccggacgccttgaagtgatgttattcacggatgctctggataaatatcagcac
ctgctggaaaatgaccgcatacttatcgtcagcggacaggtcagctttgatgacttcagt
ggggggcttaaaatgaccgcccgcgaagtcatggacattgacgaagctcgcgaaaaatac
gcgcgcgggcttgctatctcgctgacggacaggcaaattgatgaccagcttttaaaccgt
ctccgtcagtctctggaaccccaccgctcggggaccattccagtacacctctattatcag
agggctgatgcacgcgcacggttgcgttttggcgcgacatggcgtgtctctccgagcgat
cgtttactcaacgatctgcgtagccttatcggcacggagcaggtggaactggagtttgac
taa
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