Yoonia rhodophyticola: AABB31_11290
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Entry
AABB31_11290 CDS
T10513
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
yrh Yoonia rhodophyticola
Pathway
yrh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
yrh00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AABB31_11290 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yrh03021
]
AABB31_11290 (rpoD)
Transcription machinery [BR:
yrh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AABB31_11290 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Med21
PASTA
Motif
Other DBs
NCBI-ProteinID:
XFU26718
UniProt:
A0ABZ3JCG5
LinkDB
All DBs
Position
complement(1262242..1264224)
Genome browser
AA seq
660 aa
AA seq
DB search
MAAKDNDDRKDGDQDGDMSLDMSQAAVKKMIAEARERGYITYDQLNAVLPPDQVSSDQIE
DVMSMLSEMGIQVTEEEESEESEEPQGNTQVATVSGSRDVAIGGAEAEKLDRTDDPVRMY
LREMGSVELLSREGEIAIAKRIEAGRNTMILGLCESPLTFQAITIWRDELLSEDILLRDV
IDLETTFGNQMGEDGEEETVVAPVATETPEKKEETQELDADGNPITKDDDDDDDDQANMS
LAAMEAALKPRVLETLEIIARDFATLSDMQDARMSATLNEDSSFSDKAEGKYQKLRAEIV
ELVNSLHLHNNRIEALIDQLYGINRRIMSIDSAMVKLADQARINRREFIDAYRGRELDPN
WLEEMSEKSGRGWQMLIEKSTDKIEDLRGDMAQVGQYVGVDITEFRRIVQQVQKGEKEAR
QAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW
WIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEK
VRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAILPLDSAIQENLKETTTRVLASLTP
REERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDQ
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgaaagacaacgacgatcggaaagacggcgaccaggacggtgatatgagcctg
gatatgagccaggccgctgtcaaaaagatgatcgccgaggcgcgcgagcgcggctacatc
acctacgatcagctgaacgcggtgctgccgcctgatcaggtatcgtctgaccagatcgaa
gacgtcatgtcgatgctgtccgaaatgggcattcaggtcaccgaagaagaagaaagcgaa
gaaagcgaagagccgcagggcaacacgcaggtggccactgtctcgggctcgcgcgatgtg
gcaatcggcggcgccgaagctgagaagcttgaccggacggatgatccggttcggatgtat
ctgcgcgaaatgggctcggtcgagcttttgtcgcgtgaaggtgaaattgcgatcgccaaa
cggatcgaggctggccgcaatacgatgatccttgggctttgcgaaagcccgctgacattc
caggcgatcaccatctggcgcgatgaattgttgtccgaagacattttgctgcgcgatgtt
atcgaccttgagacgacgttcggtaaccagatgggcgaggatggtgaagaggaaaccgtt
gtcgcccctgtcgccaccgagacccccgagaaaaaagaagaaacacaagagctggacgcc
gacggcaatccgatcaccaaggatgacgacgacgacgacgatgatcaggccaacatgtcg
ctcgccgccatggaagccgcgctaaagccacgcgttctggaaacactggaaatcatcgcg
cgcgactttgccacgctgtctgacatgcaagatgcgcggatgtccgcgacgctgaacgag
gattcgtcattctctgacaaggcggaaggcaaatatcagaaactgcgcgccgaaatcgtg
gagttggtgaattcgcttcacctgcataacaatcgtatcgaggcgttgattgaccagctt
tacggcatcaaccgccgcatcatgtcgattgatagcgccatggtgaagcttgccgatcag
gcccgcatcaaccgtcgtgaattcatcgacgcctatcgcggtcgcgaacttgatccaaac
tggctggaggaaatgtcagaaaagtccggtcgtggttggcagatgctgatcgagaaatcg
acggacaagatcgaggatttacgcggcgacatggcgcaggtcggccaatatgtgggcgtt
gatatcaccgaattccgtcgcatcgtccagcaggttcaaaagggcgagaaagaggcccgt
caggccaagaaggaaatggtcgaagcgaacctgcggctcgtgatctccatcgccaagaaa
tataccaaccgtggcctgcaattccttgacttgatccaggaagggaatatcggcttgatg
aaggccgtggacaaatttgaatatcgtcgcggctacaagttcagcacctatgcgacatgg
tggatccgtcaggcgatcacccggtcgattgccgatcaggcgcggacgatccgtattcct
gtccatatgatcgaaacgatcaacaagctggtgcgcaccggtcggcagatgctgcatgaa
atcggccgtgaaccgacgcccgaggaattggcagaaaagctgcaaatgcctttggagaaa
gtccgcaaggtcatgaagatcgcgaaagagccgatctcgctcgaaaccccgatcggggac
gaggaagacagccagcttggcgatttcatcgaggacaagaatgcgatcctgccgctggac
agcgcgatccaggagaacctgaaagagaccacaacccgcgtcttggcatcgttgaccccg
cgcgaggaacgggttttgcggatgcggttcgggatcgggatgaataccgatcatacgctt
gaagaagtgggtcagcagttcagcgtaacgcgtgagcgtattcgccagattgaggccaag
gcgctgcgcaagctcaagcaccccagccggtcgcgcaagctacggtcgttcctcgatcaa
tag
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integrated database retrieval system
