Yoonia rhodophyticola: AABB31_20185
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Entry
AABB31_20185 CDS
T10513
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
yrh Yoonia rhodophyticola
Pathway
yrh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yrh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AABB31_20185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yrh03019
]
AABB31_20185
Enzymes [BR:
yrh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AABB31_20185
Messenger RNA biogenesis [BR:
yrh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AABB31_20185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_C_2
GRP
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WZU67242
UniProt:
A0AAN0NKF3
LinkDB
All DBs
Position
3681718..3683001
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AA seq
427 aa
AA seq
DB search
MDFDMLGLAPRLISVLKEQGITDPTPIQTQAIPHAMNGRDVMGLAQTGTGKTAAFGLPMI
HALMKAGKKPNAKSVRGLILAPTRELAKQIADNLTAYTKGSHLKVALVVGGAGIVGQTKR
LAGGVDLLVATPGRLIDLLDRRAVRLDETIYLVLDEADQMLDMGFIHALRRIAPLLAKDR
QTMMFSATMPKLMNELADTYLTDAVRVQVNPPGQAVKKINQSVHFVAQAAKTDLLIELLD
AHRDELALVFGRTKHGCEKLYKVLEKKGFAAASIHGNKSQGQRDRALAAFKAGKVRVLVA
TDVAARGIDIPDVRHVYNYDLPNVAENYVHRIGRTARAGADGAAVALVAPDEMIELQDIE
KAMKETIPVASGRRWEVQPGQKKRPNGGGGRRGGGGGGNRQGKPGGGKPGGQRRRGGGNR
SRGKSAA
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggattttgacatgctgggccttgcgccccgactgatcagcgtactgaaagaacaaggg
atcactgatcccaccccgatccagacccaagccattccgcatgccatgaatggccgcgat
gtgatggggctggcgcagaccggcaccggcaagaccgccgcctttggcctgcccatgatc
cacgccttgatgaaggcgggcaagaaacccaatgccaaatcggtgcgtggtctgatcctg
gcccccacacgggaactggccaagcagattgccgataatctgaccgcctacacaaaaggc
agccatctgaaagtggcgcttgtcgtgggcggggccggcattgtgggccagaccaagcgg
ctggctggcggtgttgacctgctggtggcgacccccggtcgtctgattgacctgctcgac
cggcgcgctgtgcgtctggacgagacgatctatctggtgctggacgaggctgaccagatg
ctggatatgggctttatccatgcgctgcgacggattgcgcctctcttggccaaagatcgc
cagaccatgatgttttcggccacaatgcccaaactgatgaatgaactggccgatacctat
ctgacggacgctgtccgcgtgcaggtgaacccgccggggcaggccgtcaagaagatcaat
caatccgttcactttgtcgcgcaggccgccaagaccgatctgctgatcgagctgttggac
gcccatcgggacgagctggcactggtatttggccgcaccaagcatggctgtgaaaagctg
tataaggtgctggaaaagaagggctttgctgcggcctcgatccacggcaacaagtcgcag
ggccaacgtgaccgcgcgcttgccgccttcaaggcagggaaggtgcgcgtactggtggcc
acggatgtggctgcgcgcggtattgatatccctgatgtgcgccacgtctataactacgat
ctgccaaatgtcgcggaaaactatgtgcaccgcatcgggcgaacggcccgtgccggtgcc
gatggtgccgccgttgcgctggttgcacccgatgagatgatcgagctgcaggatatcgaa
aaggcgatgaaagagaccatacccgtggcgtctggtcggcggtgggaggtccagcccggc
cagaaaaagcgccccaatggcggcggtggccgacggggcggcggcggcggcggtaaccgg
caggggaaacccggtggcggtaagcccggcgggcagcgcagacgcggtggcggcaacaga
tcacgcggaaaatccgccgcgtaa
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