Yersinia rohdei: CH64_2060
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Entry
CH64_2060 CDS
T03610
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
yro
Yersinia rohdei
Pathway
yro02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
yro00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CH64_2060 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yro03021
]
CH64_2060 (rpoD)
Transcription machinery [BR:
yro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CH64_2060 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sas-6-like_oligomerization
DNA_ligase_A_N
HTH_SUN2
Motif
Other DBs
NCBI-ProteinID:
AJJ09732
UniProt:
A0A0U1HNP7
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All DBs
Position
2285232..2287070
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AA seq
612 aa
AA seq
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MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVLEEAP
DADDLMLAENTTDTDDDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEEGINQVQCSVAEYPEAITYLLEQYDRVEAGESRLSDLITGFVDPNAEEDIAPTA
THVGSELSTEEMDDDDDEEEDEEEEEDDNSIDPELARQKFSELREQYESTRMEIKKNGRS
HANAAAEILKLSEVFKQFRLVPKQFDYLVNNMRAMMDRVRTQERIIMKLCVEQCKMPKKN
FVTLFSSNETSDTWFAAAIAMGKPWSEKLKDVSDDVQRSLQKLRQIEEETGLTIEQVKDI
NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPE
ELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLR
SATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSEVLRSFLDD
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagctacttgtcacccgtggtaaggagcaaggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgattccgatcag
atcgaagacatcatccagatgattaatgacatgggcatacaggtgctggaagaagcgcct
gatgctgatgatttaatgctggccgagaacaccactgataccgacgatgacgcagccgaa
gctgctgcacaggtgttgtccagtgttgaatccgaaatcgggcgtactactgacccggtg
cgtatgtatatgcgcgaaatgggtaccgttgagctattgacgcgtgaaggcgagattgat
atcgccaaacgcatcgaagaaggtatcaatcaggttcaatgttcagttgctgaatatcct
gaagctattacttatctgttggaacaatatgatcgtgttgaagcgggtgaatcccgttta
tctgacctgatcaccggctttgttgatccaaacgccgaagaagacattgcgccgacagca
actcacgttggttctgaattatccactgaagaaatggatgatgacgacgacgaagaggaa
gacgaggaagaagaagaagacgataacagcattgatccagagctggctcgtcagaaattc
agcgaattacgtgagcagtacgaaagtacgcgcatggaaatcaagaaaaacggccgtagc
catgcgaatgctgccgctgagattctgaagctttctgaagtcttcaaacagttccgcctg
gtaccgaagcagttcgactatctggttaataacatgcgtgccatgatggaccgcgttcgt
actcaagaacgtatcatcatgaagctgtgtgttgaacagtgtaaaatgccgaagaaaaac
ttcgttaccttgttctccagtaatgaaactagcgatacttggtttgcggcagcgatcgcc
atgggtaaaccttggtctgaaaaactgaaagatgtttcggacgatgttcaacgtagcttg
cagaaattgcgccagatcgaagaagaaaccggtctgaccatcgaacaagtgaaagacatc
aaccgccgtatgtctatcggtgaagcaaaagcccgtcgcgccaagaaagaaatggttgag
gctaacctgcgtttggttatctctattgcgaaaaaatacaccaaccgtggcctgcaattc
cttgatttaattcaggaaggcaatatcggcttgatgaaagcagtagataaattcgaatac
cgtcgtggttataagttctcaacttatgcaacttggtggattcgtcaggcaatcacccgc
tctatcgcggatcaggcacgcaccatccgtattccggtgcatatgattgagaccattaac
aaactcaatcgtatctcacgccagatgctgcaagaaatgggccgcgagccaacgccagaa
gaattggctgaacgcatgctgatgccggaagacaaaatccgtaaagtattgaagattgct
aaagagccaatctcaatggaaaccccaatcggtgatgatgaagattcacatctgggcgat
ttcattgaagataccactctggagctgccgctggactctgcaacttctgagagcctgcgt
tctgccactcacgacgtgttagctggcctaactgcgcgtgaagccaaagttctgcgtatg
cgttttggtatcgatatgaacactgaccacactctggaagaagtgggcaagcagttcgac
gtaacccgtgaacgtatccgtcagatagaagctaaggcattgcgcaaactgcgccaccca
agccgctctgaagtgctacgcagcttccttgacgattaa
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