Yersinia rohdei: CH64_2796
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Entry
CH64_2796 CDS
T03610
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
yro
Yersinia rohdei
Pathway
yro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH64_2796 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yro03019
]
CH64_2796 (recQ)
03400 DNA repair and recombination proteins [BR:
yro03400
]
CH64_2796 (recQ)
Enzymes [BR:
yro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CH64_2796 (recQ)
Messenger RNA biogenesis [BR:
yro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CH64_2796 (recQ)
DNA repair and recombination proteins [BR:
yro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CH64_2796 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Peptidase_S66
Motif
Other DBs
NCBI-ProteinID:
AJJ09620
UniProt:
A0A0U1HUQ9
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All DBs
Position
3121678..3123510
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AA seq
610 aa
AA seq
DB search
MSTAAVINRELLAEQVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIP
ALVTEGLTLVVSPLISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQIKLLY
IAPERLVMESFLDQLHQWRPALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIAL
TATADEATRGDIVRLLNLENPLIQVSSFDRPNIRYTLVEKFKPLDQLWRFVQDQRGKSGI
IYCNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAHVQEAFQRDDLQVVVATVAFGMGI
NKPNVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPADMAWLRRCLEEKPAGAQ
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGKQQSCGNCDICLDPPKRYDGLADAQKAL
SCVYRVGQRFGLGYIVEVLRGANNQRIREFGHDKLSVYGLGREQSHEHWVSVLRQLIHLG
LLSQNIAMFSALQLTEAARPVLRAELPLQLAVPRIQSLKARSSANQKSYGGNYDRKLFAK
LRKLRKSIADEGNIPPYVVFNDTTLLEMAEQMPITASELLSVNGVGQRKLERFGAPFMAM
IRDHVDNNDD
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
gtgtcaaccgcagcagtgataaatagggaattattggcagagcaagtattgcgagatact
ttcggctatcagcaattccggcccggacaacaagaaattatcaacgccaccttatcaggg
caagactgcctggtagtgatgccaaccggtgggggtaaatccttgtgttatcagattccg
gcactggtgacggagggcttaacgctggtggtttccccgttaatctccctgatgaaagac
caggttgaccaactgctggcctatggcgtgggggcggggtgcttaaactcatcgcaaaca
cgtgaacagcaattggcagtgatggacggttgtcgcagtggtcaaattaaactgctgtat
atcgcgccagaacgtctggtaatggagagctttcttgatcaactgcatcagtggcgtccg
gctctgttggcggtggacgaagcccattgtatttcccaatgggggcatgatttccgcccg
gaatatcgtgctcttggtcagttaaagcaacgtttccccgatttaccggttattgctctg
accgctacggcggatgaagcgacgcgcggtgatattgtgcgtttgctcaatttagaaaat
ccattgattcaggtcagtagctttgaccgccccaatatccgctataccttggtcgagaag
ttcaaacctctggaccaattatggcgttttgtccaagaccaacgcggtaaaagtggcatt
atttattgtaatagccgggcaaaagtggaagacactaccgcccgcttgcaaagccgtggt
ttgagtgtcgcggcttatcatgccgggctggataacgaacgccgggcgcatgtgcaggaa
gcttttcagcgcgatgacctacaagtggtggtcgccactgttgccttcgggatggggatt
aataaaccgaatgtccgctttgtagtgcattttgatattccgcgcactatcgaatcttac
tatcaggaaaccggtcgcgccgggcgtgatggtttgcccgccgaagctatgctgctgtat
gacccggccgacatggcgtggttgcgccgctgtctggaagaaaaaccggcgggcgcacaa
caagatatcgagcggcataaactcaatgcgatgggcgcgtttgccgaagcccaaacttgt
cgccggttagtgttactcaactattttggtgagggtaaacagcaatcttgcggtaactgc
gatatttgccttgatccacccaagcgctatgacgggctagctgatgcacaaaaagcgcta
tcttgtgtgtatcgggttgggcagcgttttggtttggggtatatcgtcgaagtgctgcgc
ggggccaataatcagcgcattcgtgaatttggtcatgacaaactatccgtctatggtctt
ggtcgcgaacaaagtcatgagcactgggtcagtgtattgcgccagctgattcacctgggg
ctactgagccaaaatattgcgatgttctctgccttacaactgacagaagccgcccgcccg
gtattacgtgctgaattgccattgcaactggcggtgccgcgaattcagagcttgaaagcc
cgcagcagtgccaatcaaaaatcctatggcggcaattatgaccgcaagttatttgccaaa
ttacgcaaattgcgcaaatctatcgctgacgaaggcaatatcccgccttacgtggtattt
aacgataccactttgttagagatggcggagcagatgccgattaccgccagcgagctattg
agtgttaatggtgttgggcagcggaagttggagcgttttggcgcacctttcatggccatg
atccgtgaccatgtagataataacgacgactaa
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