Yersinia rohdei: CH64_3070
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Entry
CH64_3070 CDS
T03610
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
yro
Yersinia rohdei
Pathway
yro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH64_3070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yro03019
]
CH64_3070
03009 Ribosome biogenesis [BR:
yro03009
]
CH64_3070
Enzymes [BR:
yro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CH64_3070
Messenger RNA biogenesis [BR:
yro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CH64_3070
Ribosome biogenesis [BR:
yro03009
]
Prokaryotic type
rRNA helicases
CH64_3070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
Cas3-like_C_2
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
AJJ09591
LinkDB
All DBs
Position
3410947..3412953
Genome browser
AA seq
668 aa
AA seq
DB search
MTTELETSFADLGLSAPILSALTALGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAA
FGLPLLHNIDPALKAPQVLVLAPTRELAIQVAEALTSFSKDIKGVNVVALYGGQRYDVQL
RALREGPQVVVGTPGRLLDHLKRGTLKLSNLKGLVLDEADEMLRMGFIEDVENILAQIPA
EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQVYWKVGGGYRKNEALVR
FLEAEDFDAAIIFVRTKNATLEVAETLERSGYSSAALNGDMNQALREQTLERLKDGRLDI
LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQ
NIERTMKLTIPEVELPNAELLSERRLAKFAAKVSQQLESSDLDLYRALLTKLQPEEEFDI
EALAAALLKMAQGERPLILPPEAPRRPQREFNSRDDRSNDRGRDRDRSDSRRDSRPDSRA
DSRDGGERPARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFA
SHSTIELPKGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHERRERPAGGNGGERRGGGRS
FGGERRDGAGAPPRRSFGSDRAPAGGGERRGGNRDGQRSAAPRRDDAAAPAASAAPASAP
TRRRFGDA
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgactactgagcttgaaacctcttttgctgatctggggctgtccgctccaattctttcc
gcccttactgctttgggctatgaaaaaccatctccaattcaattggaatgtattccacac
ctgttgaacggtcgtgatgttcttggtatggcgcaaaccggtagtggtaaaaccgctgca
ttcgggcttccgctgttgcacaacattgacccagcactgaaagcaccacaggtgctggta
ctggctccaacccgtgagttggcgatccaagttgctgaagcattaaccagcttctctaaa
gatattaaaggcgttaacgtggtggccttgtacggcggccagcgttatgacgttcaatta
cgcgctttgcgtgaggggccacaagttgttgttggtaccccaggtcgtctgttagaccac
ctgaaacgcggtacccttaagctgtccaacctgaaaggtttagtgttggatgaagcagat
gaaatgctgcgcatgggctttattgaagatgtcgaaaacattctggcgcagatcccggct
gaacatcagaccgcgctgttctctgcaaccatgccagaagcgattcgtcgtataacccgt
cgctttatgaaagagccacaggaagttcgtattcagtctagcgtgactactcgccctgac
attagccaggtctattggaaagtgggtggcggttaccgcaaaaacgaagcactggtacgt
ttcttggaagctgaagatttcgatgctgccatcatcttcgtgcgcaccaaaaatgcaacg
ctggaagtggcagaaactctggagcgtagcggttatagcagcgctgcattgaacggcgac
atgaaccaggccctgcgtgagcagactctggaacgtctgaaagatggccgtttggatatt
ctgattgcaactgatgttgctgcacgtggtttggacgttgagcgtatcagcctggttgta
aactatgatatccctatggattcagagtcttatgttcaccgtatcggccgtactggtcgt
gccggtcgtgctggccgtgcgttactgtttgttgagaaccgtgaacgtcgcctgttgcag
aacattgaacgcaccatgaagttgactattccagaagttgagctgccaaacgcagaactg
ctgagcgaacgccgtttagctaaatttgcggctaaagttagccaacagctggaaagcagt
gatttggacttgtaccgtgcattgctgactaaactgcaaccagaagaagagtttgatatc
gaagcgctggcagctgcattgctgaagatggcacagggcgaacgtcctttgatcctgcca
ccagaagcaccacgtcgcccacagcgtgaatttaattctcgtgatgatcgtagcaacgac
cgtggccgtgaccgtgaccgttctgacagccgtcgcgacagtcgtcctgacagccgcgct
gacagccgtgatggtggcgaacgtccagcacgtcgcgaacgtcgtgatgttggcgagatg
gaactgtatcgcattgaagttggccgtgatgatggtgttgaagttcgtcatatcgttggc
gctattgctaacgaaggtgatatcagcagccgttatatcggtaacatcaagctgtttgcg
tcccactcaactatcgaattgccaaaaggcatgccgggcgaaatgttatctcacttcacc
cgcacccgtatcctgaacaagccgctgaacatgcagctgttgggtgatgcacagccgcat
gagcgccgtgagcgtccagctggcggtaacggtggtgagcgtcgtggtggtggccgttca
ttcggtggcgaacgtcgtgacggtgccggtgcacctcctcgccgttcattcggtagcgac
cgtgctccagccggtggtggcgaacgtcgtggtggcaaccgtgatggtcagcgctcagct
gcaccacgtcgcgatgatgccgcagcacctgctgcatcagcagcaccagcatcagcacct
actcgtcgtcgtttcggtgatgcataa
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