Yersinia rohdei: CH64_3257
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Entry
CH64_3257 CDS
T03610
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein rapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
yro
Yersinia rohdei
Brite
KEGG Orthology (KO) [BR:
yro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yro03021
]
CH64_3257 (rapA)
Transcription machinery [BR:
yro03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
CH64_3257 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_34
Cas3-like_C_2
Flavi_DEAD
COG2_N
Motif
Other DBs
NCBI-ProteinID:
AJJ09913
UniProt:
A0A0U1HW58
LinkDB
All DBs
Position
complement(3647325..3650231)
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AA seq
968 aa
AA seq
DB search
MPFTLGQRWISDTESELGLGTVVAIDVRMVTLLFPATGENRLYARNDSPITRVMFNPGDT
ITHHEGWQLKVEDVTHENGLITYIGTRLDTEETGVSMREVLLDSKLTFSKPQDRLFAGQI
DRMDRFALRFRARKYQSEQFRLPWSGLRGIRASLIPHQLHIAYEVGQRHAPRVLLADEVG
LGKTIEAGMIIHQQLLAGRAERVLIVVPESLQHQWLVEMLRRFNLRFSLFDDSRYSEALL
DSSNPFETEQMVICSLDFVRRNKQRLEQLADASWDLLVVDEAHHLAWSEDAPSREYQVIE
QLAENIPGVLLLTATPEQLGQQSHFARLRLLDPDRFHDYEEFINEQQKYRPIADAVTLLL
GGERLTDDKLNLLGELINEQDIEPLLKAANSQTDDSEAARQELVTMLMDRHGTSRILFRN
TRNGVKGFPHRVLHQIKLPLPTQYQTAIKVSGIMGAKKTLEARAKDMLYPEQIYQEFEGE
NATWWNFDPRVEWLLNYLIANRGEKVLVICAQAATALQLEQVLREREAIRAAVFHEGLSL
IERDRAAAYFASEEDGAQVLLCSEIGSEGRNFQFACQLVMFDLPFNPDLLEQRIGRLDRI
GQNREIQIMVPYLENTAQAILVRWYHEGLDAFEHTCPTGRTIYDSGYQELIGYLATPSEQ
EGLDEFIHTCRQQHEGLKLQLEQGRDRLLEMHSNGGEHGQELAQIIADQDNDVNLVSFAL
NLFDIVGINQEDRSDSLIVLTPSDHMLVPDFPGLPQDGCTVTFDREQALSREDAQFVSWE
HPIIRNGLDLILSGDTGSCAVSLLKNKALPVGTLLAELVYVVEAQAPKHLQLTRFLPPTP
VRMLMDRNGTNLAAQVEFESFNRQLNAVNRHTSSKLVNAVQQEVHTMLQQAEALVEEQAR
VLIDAAKHEADDKLSAELARLEALKAVNPNIRDDEIETLEHNRKMVLENLNQAGWRLDAI
RLVVVTHQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcaacgctggatcagcgacacagaaagcgaacttggattgggt
actgtcgttgccattgacgtacgcatggtcaccttactgtttcccgcaaccggtgaaaac
cgcctttacgccagaaatgactcgccaatcacccgagtaatgttcaatccgggcgatacc
atcacccaccacgaaggctggcagctgaaagtggaagacgtgactcacgaaaatgggctg
attacctatatcggtacccgtctggataccgaggaaaccggcgtttcaatgcgtgaagtt
ttgctcgatagcaaactgacttttagcaaaccgcaggacaggttatttgccggccaaatc
gaccgcatggatcgttttgccctgcgttttcgcgcccgtaaatatcaaagtgaacaattc
cgtctgccctggagtgggctgcgcgggatccgtgccagcttaatcccacaccaattacat
attgcttatgaagtgggtcagcgccatgcaccgcgtgtattactggccgatgaagtaggg
ttagggaaaaccatcgaggccggcatgataatccaccagcaactgctggctggccgtgct
gaacgtgtgctgattgtggtgccagaaagcctgcaacatcagtggctggttgaaatgttg
cgccgcttcaatctgcgtttctcgctgtttgatgacagccgctattccgaagctctgctt
gatagcagtaatccatttgaaaccgaacaaatggtgatttgctcactggatttcgtgcgc
cgtaataaacagcggctggaacagttggcggatgcgtcttgggatctgctggttgtggat
gaagcccaccatttggcctggagcgaagatgctccgagccgcgaatatcaggttattgag
caactggccgagaacatccccggcgttttactgttgaccgcaaccccagaacagttgggc
cagcagagccactttgctcgcctgcgtttactggatccagatcgtttccacgattacgaa
gagtttatcaatgagcagcagaaataccgtccaatcgcggatgccgtaacactgctattg
gggggcgagcgtttaactgacgataagctgaacctgctcggcgaactgattaatgaacaa
gatattgagccactgctaaaagcagccaacagccaaactgacgatagcgaagccgcacgt
caagagctggtcactatgctgatggacaggcatggcaccagccgtattttgtttagaaac
acccgtaatggggtgaaaggcttcccacaccgcgttttacaccagattaagttgccatta
ccgacccagtatcagacggcaattaaagtgtccggcattatgggggcgaagaaaaccctg
gaagctcgcgccaaagatatgctttatcctgagcaaatctatcaagaatttgagggtgaa
aacgccacctggtggaacttcgatccgcgcgtggaatggctgcttaactatctgattgct
aatcgcggtgagaaagtgctggttatctgtgcacaggccgcaaccgcattgcagctggag
caagtattacgtgagcgcgaagctatccgtgctgcggtgttccacgaaggtttgtcgctg
attgaacgtgaccgtgctgcggcctattttgcctctgaagaagacggcgctcaggtgctg
ttatgttcagaaattggctctgaagggcgtaacttccagttcgcttgccagttagtcatg
ttcgatttgccttttaacccggacttactggaacagcgtattggccgtctggatcgaatc
ggtcaaaaccgtgaaattcagataatggtgccttatctggaaaataccgcacaagcaata
ttggtgcgctggtatcacgaaggtttggatgctttcgagcacacttgtccgacaggccgc
accatttatgacagtggttatcaagaacttattggttatctggccacgccgagcgaacaa
gaaggcttggatgaatttatccacacctgtcgccagcagcatgaagggctaaaactccaa
ctggagcaaggccgtgaccgcctgttagaaatgcattccaatggcggcgagcatgggcaa
gaactggctcaaatcattgcagaccaagataatgacgttaatttagtcagtttcgcactg
aatttattcgatattgtcggtatcaatcaagaagatcgcagtgacagcttgatagtgttg
acgccatctgaccatatgctggtgcctgatttcccaggattaccgcaggatggctgtacg
gtaactttcgatcgtgaacaagcgttatcacgcgaagatgcccaatttgtcagttgggaa
caccctatcatccgcaatggtttggatctgattttatctggcgataccggcagctgtgca
gtttctttgttgaaaaacaaagcattacctgtcggcactctgttagctgaattggtctat
gtggtcgaagcacaagcaccaaaacacctgcaactgactcgtttcttgccaccgacccca
gtgcgcatgcttatggatcgtaacggcaccaatctggcggcacaggtcgagtttgaaagt
ttcaaccgtcagctcaatgcggtcaaccgccacacgtccagcaagttggtcaatgcggtg
cagcaagaggttcacaccatgttgcaacaagcagaagcattggttgaagaacaggccagg
gtgctgattgatgcagccaagcatgaagccgatgacaaactgagtgctgaattggcacgt
ctggaagcgctgaaggcggttaaccccaatattcgtgatgacgaaatagaaacattggaa
cataaccgtaaaatggtgctggaaaacttaaatcaggccggttggcggttagatgctatc
cgtctggtcgtggttacacaccagtaa
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