Yersinia rohdei: CH64_3534
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Entry
CH64_3534 CDS
T03610
Name
(GenBank) exonuclease SbcC family protein
KO
K03546
DNA repair protein SbcC/Rad50
Organism
yro
Yersinia rohdei
Brite
KEGG Orthology (KO) [BR:
yro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yro03400
]
CH64_3534
DNA repair and recombination proteins [BR:
yro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CH64_3534
Archaeal homologous recombinant proteins
CH64_3534
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
AAA_21
ABC_tran
SMC_N
nSTAND3
TsaE
Cas6b_C
cobW
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AJJ11597
LinkDB
All DBs
Position
complement(3979051..3982743)
Genome browser
AA seq
1230 aa
AA seq
DB search
MKILSLRLKNINSLQGEWKIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHQTPR
LDSISSSQNELMTRHTAESLAEVEFEVKGVRYRAFWSQRRAKNSPEGNLQAPKVELALCE
NGKILADKVGDKLGKIAEITGLDFGRFTKSMMLSQGQFAAFLNAEANKRAELLEELTGTD
IYGRLSEQVFEQHKQAKISLDALHQQARGIELLNEEQRLALSQQIEALSQQEKQLSSEQL
VNQRQINWLTGWQLQQKNLLEYQQQQKFTEQEYQQAQPELQRLARSEPAEKLRPLLQECS
RSQQDLHQVQQRIATLNQQQQQLQTQLTPLAVALEQAQLARQQQAAKQHEQETLIEQKVV
PLDNLIAQQQHLLAQLATQLQQLRGKEQQGRQQLELNLQQLQQTHQRLQQLAEYAHLHTH
HQHWEKNLPLWREQFRQIHMQQQQSAESKQQLQQQITLLNELQQQTTTLNEQDKQQQTAL
AQAHSQTSSIQQQLSRLEQLQPLAQLRQQLTVLQQQRPMRQQLAALSPLAQQIQEQHDKQ
QQQLILQQQQLKLLEKQLTEKRQLYKQQKQHLTDLETLFEREKQIVRLEAERAKLQSGKA
CPLCGALDHPAITEYQAVKPSETAVRVEEQRRQVEQLFTAGSELSAQTQSLLQQITQCEQ
ELQHSQQQLVDYQQRWQRLVTPLALTFALNETAALDHWLEQQEQAELACQQKLTEYEKLN
NKYQQAKDILTQAEQQQQKHQQQLALVIQRQQDTQQSHQQLSAQYQRQQEELMKVRQEFS
AALAEVSLSIPETDQQQSWLALREEENQRWHQHQHEQQQLESGQKALEAQIESERRHLQE
CVDQLAAVSQQHQQAEILLQQHNQQRRTLFGDNSVTEVRQLLRQQQQQIELAHQNAAQAL
QQAQSQLNLLSGELTGLEQQYQQNQQRAATAQTELQQALANSEFDDEQALTAALLSEEER
QRLQQLKQHLGERQQQANIRLQQALEALEIHRQNCPDGIDNTADLAVLQQQSEQLLAQLK
DNALRQGELRNQLNSDAARRSNQHALFEEIERSQQQYDDWSYLNHLIGSKEGDKFRKFAQ
GLTLDHLVYLANNQLNRLHGRYQLQRKASDALELQVVDTWQADAIRDTRTLSGGESFLVS
LALALALSDLVSHKTSIDSLFLDEGFGTLDAETLDTALDALDSLNASGKTIGVISHVEAM
KDRIPVQIKVKKVNGLGVSRLDNVFRVKSE
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattttaagcctgcgcctgaaaaatattaattctctgcaaggtgaatggaaaata
gatttcaccgcagagccttttgccagcaacggattatttgccatcacgggccctacagga
gctggcaaaacgacgttgctagatgctatctgcttggcgctgtatcaccaaacaccgcgt
ttggattcaattagttccagccagaatgagctaatgacccgccatactgcggagtcactg
gctgaagttgagtttgaggtaaaaggtgttcgttatcgtgcattttggagtcaacgtcgc
gctaaaaatagcccagaaggtaatttacaagcccctaaagttgagttggcactctgcgag
aatggcaaaatcctggcagataaagtgggtgataaactaggtaaaattgcagaaataacc
gggctggactttggccgttttaccaaatccatgatgctgtcacaagggcaatttgccgca
tttctcaatgccgaagccaataaacgtgctgaattattagaagaattaactggcaccgat
atctatggccggctatctgagcaggtgttcgaacaacataaacaagccaaaatatccttg
gatgctttgcatcaacaagccagaggtattgagctgctcaatgaagaacaacgtttagct
ctatcacaacagatagaggctctaagccagcaagaaaaacagctttcctcagagcagttg
gtgaatcagaggcaaataaactggctaaccggttggcagttacaacaaaagaatctgctg
gaataccaacaacaacaaaaatttactgagcaagaataccagcaggcacaacctgaattg
caacggttagcccgcagtgaacccgcagagaaattgcgccctttgttgcaagagtgttcg
cgtagccaacaagatttgcaccaagtacagcaacgcatcgccacgctaaaccagcaacag
caacaacttcaaacacaactcaccccgctggcggtagcactggaacaagcccagctagct
cgccaacaacaagccgccaaacagcacgaacaagaaacactgattgaacaaaaagtggtg
ccactggataaccttattgctcaacagcagcatttattagcccagttggctacccaactc
cagcagttgcgcggcaaagagcagcaaggccgacaacagcttgaactcaatttgcaacag
ctgcagcaaacccaccagcggctacaacagctcgctgagtacgcgcacctacatacccac
catcagcactgggaaaaaaatctgcctttgtggcgtgagcagttccgccaaatacatatg
cagcaacagcaatcagctgagagtaagcagcaactacaacaacaaatcacgttactcaat
gagctacaacaacagacgaccacactgaatgagcaggataaacagcagcaaaccgcatta
gcacaagcccattcgcaaaccagcagtatccaacaacaattatctagattagaacaatta
cagcccttggcacagttgcgccaacagctaacggtgcttcagcaacagcgaccaatgcgg
caacaattagcggctttatcgccactagcgcagcaaattcaagagcaacacgacaaacaa
caacagcaattaatcctccagcagcaacaactaaaattactggaaaagcagttaacagaa
aaacgtcagttatataaacaacaaaaacagcatctgacggatttagaaaccttgttcgaa
cgcgaaaaacaaattgttcgattagaagcggaaagagccaaactacaatcgggcaaggct
tgcccattatgtggcgcattggaccatcccgccattactgagtatcaggcggtaaaacca
tctgaaacagcagtacgtgttgaagaacaacgccgacaagttgagcaactattcactgca
ggttcagaactcagtgcccaaacacaaagtttgctacagcaaatcacacagtgtgagcaa
gagttacagcacagccaacagcaattggtggattatcaacagcgttggcaaaggttggta
acaccattggcgctaacattcgcactgaatgaaactgcggcgttagaccattggctggaa
cagcaagagcaagcagagcttgcctgtcagcaaaaactgactgaatatgagaaattaaat
aataaatatcaacaagctaaagatattctgacccaagctgagcagcaacagcaaaaacac
caacagcagctggctttagttattcaacgccaacaagatacccagcaatcccatcaacag
ttatcagcacaataccagcgccaacaagaagagctgatgaaagtgcgccaagaatttagt
gctgctctggcggaagtgtcactctcaatacctgaaacagaccagcagcagagttggcta
gcgctgcgcgaagaggaaaaccagcgctggcatcagcatcagcatgagcaacaacagctg
gaaagcggacaaaaagcactggaagcccagattgaaagtgaacgtcgccacttgcaggaa
tgtgtcgaccaattggcagcagttagccaacaacaccaacaagctgaaattctattgcag
cagcataatcagcaacgccggacattgtttggcgataacagtgttacagaagttcgccag
ttactgcgccagcaacaacaacaaattgaattagcacaccagaatgcagcacaagcgcta
caacaggctcaatctcaacttaatttactgtcaggtgaactgacaggattagaacagcaa
tatcaacaaaatcaacagcgtgctgccactgcccaaacggaactacaacaggcgctggca
aacagtgaatttgatgatgagcaagcactcaccgccgcattattgagtgaagaagaaaga
caacgtttgcaacaattgaaacagcacttgggcgaacgccaacaacaagcaaatattcga
ctacaacaagcccttgaagcactagagatacacagacaaaactgccctgatggtattgat
aatacagctgatttggcagtattacagcagcagtcagagcaattattggcgcaactaaaa
gacaatgctttacgacaaggcgaattacgcaatcagttaaatagcgatgctgcccgtcgt
agcaaccagcatgcattatttgaggaaattgaacgtagccaacaacaatatgatgactgg
agctatctcaatcacttaataggctccaaagagggtgataaattccgcaaatttgcacag
ggtctgacactcgaccacctggtttatctggcaaataaccaacttaaccgcttgcacggc
cgctatcagttgcaacgtaaagccagtgatgcactggagctacaagtagtggatacctgg
caggccgacgccatacgtgatacccgcacgttgtccggtggagaaagctttttagtcagt
ttggcgctggctttggcgctatcagatttggtcagccataaaaccagtattgattcacta
ttccttgatgaaggctttggcacactagatgcagaaacactggataccgcactggatgcc
ctggatagcctaaatgcatccggcaaaaccataggggttatcagccatgttgaggcaatg
aaagatcgaatccccgtgcagattaaagtgaaaaaagttaatggattaggtgttagccgt
ttggataacgtgtttagggtcaagagtgagtaa
DBGET
integrated database retrieval system
