Yersinia rohdei: CH64_3844
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Entry
CH64_3844 CDS
T03610
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
yro
Yersinia rohdei
Pathway
yro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH64_3844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yro03019
]
CH64_3844
Enzymes [BR:
yro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CH64_3844
Messenger RNA biogenesis [BR:
yro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CH64_3844
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
AAA_22
Shikimate_DH
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AJJ11723
UniProt:
A0A0U1HTI0
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All DBs
Position
4314194..4315546
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AA seq
450 aa
AA seq
DB search
MSFDSLGLNADILRAVEEQGYEVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLSQNQQPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAR
RQNLLFSATFSDEIKGLASKLLNNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMI
GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDI
ERLLKREIPRIALDGYEPDPSIKADPIQNGRQGRGAQRPGMGRGSSAGRPQNGGGAGRGD
SRTSRPRSQADGQRRPAGPSSRGRSSKPGE
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgattctctcggcttaaacgccgacatcctgcgcgctgttgaagagcagggc
tatgaagtgccgacgccaattcagcgtcaggcaatccctgtggtactggaaggccgtgat
ttaatggccagtgcgcaaaccggtaccggtaaaactgctggttttaccttgccgctgttg
caacttctaagtcagaaccaacagccaattaaaggccgtcgtccggttcgtgcgctgatt
ttgacgccaacccgcgaactggctgcgcagattgacgaaaacgtgcagagttacagcaaa
tacctgaagctgcgttcgctggtggtatttggtggtgttagcattaacccacagatgatg
aaattgcgtggtggtgttgatattctggtcgcaacccctggccgtttactggatctggaa
catcagaatgcagttgacctgtccaagattgagattttagtattggacgaagccgaccgc
atgctggatatgggctttattcacgatatccgccgtgtcttggcaaaactgccagcccgc
cgccaaaacctgctgttctccgcgactttctcggatgaaattaaagggttagccagcaaa
ctgctgaacaacccggcttcggttgaagttgcgcgccgcaataccgcttctgagcaaatt
gcgcaaagtgttcattttgtagataaaaaccgcaaacgcgagttgctgtctcagatgatt
ggcgaaggtaactggcagcaagtcttggtgtttaaccgcaccaagcacggcgctaaccat
ttagctgagcaattgaataaagacggcattactgctgcggcaattcatggtaataaaagc
cagggtgcgcgtactcgtgcattggctgattttaaagacggtaaaatccgggtcttggtg
gcgacagatatcgccgctcgtggtctggatatcgatcagttaccgcatgtggttaactat
gaattgccaaacgttccggaagattacgtgcaccgtattggccgtaccggccgtgcagaa
cgtaccggtgaagcgatttctttagtttgtgttgatgaacataaactgctgcgtgatatt
gaacgtttattaaaacgtgaaattccacgtatcgcgctggatggctatgagccggaccca
agcattaaagcggatccgattcaaaatggtcgtcaggggcgtggtgcacaacgtcctgga
atgggccgtggtagcagcgctggccgcccacaaaatggcggtggtgccggtcgcggtgat
agccgcaccagtcgtccacgcagccaggctgatggccaacgccgtccggcaggcccgtcg
tcacgtggtcgtagcagcaaaccgggcgaataa
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