Yersinia rohdei: CH64_531
Help
Entry
CH64_531 CDS
T03610
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
yro
Yersinia rohdei
Brite
KEGG Orthology (KO) [BR:
yro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
yro03016
]
CH64_531 (rnb)
Enzymes [BR:
yro01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CH64_531 (rnb)
Transfer RNA biogenesis [BR:
yro03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CH64_531 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AJJ09886
UniProt:
A0A0U1HW69
LinkDB
All DBs
Position
complement(588241..590175)
Genome browser
AA seq
644 aa
AA seq
DB search
MFQDNPLLAQLKQQLHTQTPRVEGVVKGTEKGFGFLEVDGQKSYFIPPPQMKKVMHGDRI
IATLHTDKDREIVEPETLVEPFLSRFVGRVQNKDGRLFIVPDHPLLRDAIQCRPATEVTH
DFKTGDWAVAEMRRHPLKGDRTFNADLTAFITDGEDHFVPWWVTLARHNLEREAPVMVES
ALHDTDLQREDLTALNFVTIDSASTEDMDDALYVEDKGDGSLLLTIAIADPTAYVDENSE
LDLIARKRAFTNYLPGFNIPMLPRDLSDNLCSLRPNERRPVLVCRVTIAADGALGDDIRF
SAAWVESKAKLVYDEVSDWLEGQGDWQPQNTAIAEQITLLKRVCDTRSEWRQQHALVFKD
RPDYRFLLGDKGEVLDIIVEHRRIANRIVEECMIAANVCAAIALRDNLGFGIYNVHTGFD
PALVEQAATVLQANGVEADPQALLTLPGFCELRRHLDALPTQFLDSRIRRFQTFAEISTL
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIITGQQAEKPQDEITVQLAERRRLNRM
AERDVGDWLYARYLQPQAGTDTRFAAEIIDVTRGGLRVRLLDNGAVAFIPAPFIHAVRDE
MVCSQETGTVQIKGETVYSQSDKIEVRIAEVRMETRNVVARPVV
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctgctggcgcagctaaaacagcaacttcacactcagacccca
cgcgtcgaaggcgtggtaaaaggtactgagaaaggctttggctttcttgaggtagacggg
cagaaaagttactttattccgccaccgcagatgaaaaaagttatgcacggtgaccggatt
attgccaccttacataccgataaagatcgtgaaattgttgagccggaaactctggttgag
ccatttttatcgcgctttgttggccgagtgcagaacaaagatggccgtctttttattgtc
cctgaccatcctctgctacgtgacgccattcaatgccgtccggccactgaggtaacccac
gatttcaaaacgggggattgggccgtcgcggaaatgcgccgccatccgttaaaaggcgat
cgcacctttaatgccgacctgaccgcctttatcaccgacggagaagaccattttgtccct
tggtgggtcaccttggcgcgccataatctggaacgtgaagccccagtgatggttgagtcc
gccctgcatgatactgaccttcagcgagaagatttgaccgcgctgaattttgtcaccatc
gacagtgccagcaccgaagatatggacgatgccctgtatgtggaagacaaaggtgacggt
tccctgttgttgaccattgccatcgccgaccctaccgcctacgtcgatgaaaacagtgag
ttggatttaatcgcccgtaaacgtgcgtttaccaactatctgccgggctttaatatcccg
atgctgccgcgcgatttatcagacaatctgtgttcattgcgccccaatgaacgccgccca
gtgctggtctgccgtgtcactatcgccgcagacggcgcgctgggagatgatattcgtttt
tctgccgcttgggtcgagtccaaagccaaattggtgtatgacgaggtgtctgactggtta
gaaggtcaaggcgactggcagccacaaaacaccgctatcgccgagcaaatcaccttactc
aaacgcgtttgtgacacccgcagtgagtggcgtcaacaacatgcattggtgttcaaagac
cgccctgactatcgcttcctgttaggcgataaaggcgaagtgctggatatcattgttgaa
caccgccggattgccaaccgcattgttgaagagtgcatgattgccgctaacgtttgtgcg
gccattgctctgcgcgataaccttggttttggtatttataacgtgcataccggatttgat
ccggcgctggtcgaacaagccgcaaccgtcttgcaagccaatggggttgaagccgatccc
caagcgctgctgacactgccgggcttctgtgaattacgtcgtcatcttgatgccctgccg
acgcagttcctcgacagccgtatccgccgtttccagactttcgcagaaatcagcaccctg
cctggccctcacttcgggttagggcttgaagcctacgccacctggacctcgccaattcgt
aaatatggcgatatggttaaccatcgcctgctaaaagccattattactggccagcaagca
gaaaaaccacaggatgaaattaccgtccaactggcagagcgccgccggttaaatcgcatg
gctgaacgtgatgtcggtgactggctatatgcccgctacctgcaacctcaagccggtacc
gatacgcgctttgcagcagaaatcatcgatgtgactcgtggtggtctgcgggtgcgcttg
ttggataacggcgcggtggcctttattccggcccccttcatccatgcagttcgtgatgaa
atggtgtgcagccaagaaaccggcaccgtgcagattaaaggcgagacggtgtatagccaa
agcgacaagattgaagttcgcattgctgaagtgcggatggaaacccgcaatgtcgtggcc
cgccctgtcgtttga
DBGET
integrated database retrieval system
