Yersinia rohdei: CH64_941
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Entry
CH64_941 CDS
T03610
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
yro
Yersinia rohdei
Pathway
yro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH64_941
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yro03019
]
CH64_941
03009 Ribosome biogenesis [BR:
yro03009
]
CH64_941
Enzymes [BR:
yro01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CH64_941
Messenger RNA biogenesis [BR:
yro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CH64_941
Ribosome biogenesis [BR:
yro03009
]
Prokaryotic type
rRNA processing factors
CH64_941
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AJJ09451
LinkDB
All DBs
Position
1021182..1024613
Genome browser
AA seq
1143 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELA
KEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQ
TPHYSVLRVRKGEEVPSLSYLLPQLHEAEMAQPLEEATLERKRPEQPALATFSLPTEVPP
ESAPAAETVKPVARPQAVASTTATTTTEQPGFFSRLFSGLKGLFGESAAAEVKPVEVEKT
ETTDTRRNDRRNPRRQNNGRKERGERTPREGRDNNTRDNGTRDNANRDNSVRDNANRDNT
NREDQRRNKRPTQQATAPQAQTEVVEADKALRDEQPQRRGDRQRRRQDDKRQAPQDVKAT
VDTEIAAAIVVDDAQPEQEERQQVMQRRQRRQLNQKVRIQSANDELNVLENPVSEPVANI
AAPVVQEEVKLLPQVSAQADDEVANDRNANNENGMPRRSRRSPRHLRVSGQRRRRYRDER
YPTQSAMPLAGAFASPEMASGKVWVRYPVAQPVEQAFVENPVEEQRPVEQVPEIVVAHTP
VVIAPVVAVPVVVAPVVAAVVEVATPTPAPQHKPGGSSSSAAAVPGRAPVVETPAVVEKT
IVEAPAAVVQEPIVQEPIVEEPIVEETVVEPAATVETQAVEEIVVEQAAPVAETAPAEAV
AVEEAAETVAQDNNESAVVEEESVVIEAAVEEQTVVENTPEAAVVTESVTAVAPVVVHPE
GVVFKHYASAPMTKAPAPDYAPASPTKGHWERPAFDFAGKGSAGGHAAATQATAPATKPQ
SVE
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcagcaagaagagttgcgtgttgcccttgtagat
ggacagcggctgtatgatttggatattgaaagcccaggtcatgaacagaaaaaagcgaat
atttacaaaggtaaaatcacccgaatcgaacccagtctggaagcggcttttgttgattac
ggcgctgaacgtcatggtttcctcccactaaaagaaatttctcgcgaatatttccctagt
aattattcttcccatggtcgcccgaacatcaaagatgtcctgcgcgaaggccaggaagtt
attgttcaggttgataaagaagaacgcggaaataaaggtgccgcactgacaacctttatc
agtctggcgggcagttatttggttctgatgccaaacaacccacgtgccggtggtatttct
cgccgtatcgaaggggatgaccgcactgaactgaaagaagcgttatcttctctgcaatta
cctgatggcatgggtctgattgtgcgaaccgcaggtgtgggtaaatctgctgatgcgctg
caatgggacttatcattccgtcttaagcactgggacgcgattaaaaaagcggctgaaggt
cgccctgctccgttcctgatccaccaggaaagcaacgtgattgtccgtgctttccgtgat
tatctgcgccccgatatcggcgaaatcctgatcgacaaccctaaagttctcgaactggct
aaagagcatattgccgcgctcggccgcccagatttcagcagcaaaatcaaattgtatagt
ggtgaaattccattattcagccactaccagattgagtctcagatagagtcggcgttccaa
cgtgaagtgcgtctgccttccggtggctccattgttatcgacaccactgaagccttgacc
gcgattgatatcaactccgcccgagctacccgtggtggtgatatcgaagaaacggccttc
aatactaaccttgaagccgcggatgaaattgcccgtcagttacgtttacgtgacttgggt
ggcctgattgttatcgacttcatcgatatgacgccagtacgccatcagcgagaagtggaa
aaccggttacgtgatgccgtccgtcaagaccgcgcacgaatccagattggccgcatctcc
cgttttggtttactggaaatgtcccgccagcgcctcagcccatcactgggtgagtcaagc
caccatgtgtgcccacgctgtagcggtaccggtacagttcgtgacaatgaatctctgtca
ctttccattctgcgtctgattgaagaagaagcgctgaaggaaaacacccatgaagttcac
gcgattgtgccagtacagattgcatcgtacttgctgaacgaaaaacgtgaatcggttaat
gctattgaaaaacgccagggtggtgtgcgcgcagtgatcgtgccaaacgatcagatgcaa
accccgcattattctgtgcttcgtgttcgtaaaggtgaggaagttccttctctcagctat
ttgttgccacagctgcatgaagcagaaatggcgcagccgttggaagaagcgactctcgag
cgcaaacgcccagaacaaccggcgctggcgactttctctctgccaactgaagtgccacca
gaatcagcccctgcggctgagacggtgaaacccgtggcacggccacaagctgtcgcatca
acaacagcaacaacaacaactgaacaacccggcttctttagccgcctgtttagtggcctg
aaagggctcttcggcgaatcagctgctgctgaagtgaaacccgttgaagttgaaaaaact
gaaaccaccgacacacgtcgtaacgatcgtcgcaatcctcgccgccagaataatggccgc
aaagaaagaggcgagcgcacaccacgtgaaggccgtgacaataacacccgcgacaatggc
actcgtgacaacgctaaccgtgataattcggttcgtgacaatgctaatcgcgataatact
aatcgcgaagatcaacgtcgcaataagcgccctactcaacaagccactgcgccacaagcg
caaactgaagtagtagaggcggataaagcactgcgtgatgagcagccgcaacgtcgtggt
gatcgccagcgtcgtcgtcaagatgataaacgccaggcaccacaggatgttaaagccact
gttgatactgagattgccgccgccattgtggttgacgatgcgcagccagagcaagaagaa
cgccagcaggtcatgcagcgccgtcagcgccgccaattgaatcagaaagtccggattcaa
tctgcgaatgatgagctaaatgttctggaaaatcctgtcagcgagccagtggcaaacatt
gccgcgccagtggttcaggaagaagtgaaattgttaccgcaggtcagcgctcaagctgat
gacgaagtagctaacgatcgtaatgccaataatgaaaacggcatgccgcgtcgttctcgc
cggtcaccgcgccatctgcgcgtcagtggtcagcgccgtcgtcgctatcgtgatgaacgt
tacccaacacaatcagctatgcctctggcaggtgcttttgcctctccagaaatggcgtca
ggcaaagtgtgggttcgttacccggtggctcaacccgttgaacaagcctttgtcgaaaac
ccggttgaagaacagcgcccagtggaacaagtaccggaaattgtggttgcacacacccct
gtagttattgctcccgtcgttgcggttccggtggtcgtggctcctgttgtcgcggcggta
gttgaggttgcaaccccaacacctgcgccacaacataaaccaggcggttcttcatcttca
gccgcagccgttcctggccgtgcgccggttgttgaaactccggcggttgttgaaaaaacc
attgttgaagcaccggcagcggttgttcaagaacccattgttcaagaaccaattgttgaa
gaaccaattgttgaagaaactgttgttgaacccgcagccacagttgaaactcaagctgtg
gaagaaatagtggttgagcaagccgctccggttgcagaaactgcaccagctgaggctgtt
gctgtcgaagaagccgctgaaactgtggctcaagacaacaatgagtcagccgttgtcgag
gaagaatcagtggtgattgaagctgctgttgaagagcaaactgtggttgaaaacacccct
gaagccgctgttgtgactgaatctgtcaccgcagttgcgccagttgttgttcatcctgaa
ggtgtggtcttcaaacattatgcctctgcacctatgaccaaagcgccagcgcctgattac
gcaccggcatcaccaaccaaaggtcattgggaacgccctgcctttgattttgcaggcaaa
ggttctgcaggtggccatgctgcggcaacacaagcaacggctccggcaacaaaaccgcag
tcagtcgaataa
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