Yersinia ruckeri YRB: BD65_1403
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Entry
BD65_1403 CDS
T03611
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
yru
Yersinia ruckeri YRB
Pathway
yru02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
yru00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BD65_1403 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yru03021
]
BD65_1403 (rpoD)
Transcription machinery [BR:
yru03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BD65_1403 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
Sas-6-like_oligomerization
HTH_SUN2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
AJI94867
UniProt:
A0A085U3I3
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All DBs
Position
1526746..1528587
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AA seq
613 aa
AA seq
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MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVLEEAP
DADDLMLAENTNDTDDDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGEARLSDLIIGFVDPNAEEDIAPTA
THVGSELSTAEMGDDENEDEDEDDDSEDDNSIDPELARQKFSDLREQYENARKEIKKNGR
SHISAAAEILKLSEVFKQFRLVPKQFDYLVNNMRTMMDRVRTQERIIMKLCVEQCKMPKK
NFVTLFASNETSDTWFAAALAMGKPWSEKLKDVSDDVQRSLQKLRQIEEETGLTIEQVKD
INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP
EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESL
RSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEVLRSFLDD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagctacttgtcacccgtggtaaagagcaaggc
tacctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgattccgatcag
atcgaagacatcatccagatgattaatgacatgggtatccaggtgctggaagaagcgcct
gatgctgatgatttaatgctggccgaaaacaccaatgataccgacgatgacgcggctgaa
gctgcagcgcaggtgttatccagtgtcgaatccgaaattggtcgtacgaccgatccggtc
cgcatgtatatgcgtgaaatgggtaccgttgaacttctgactcgtgaaggcgaaatcgac
atcgccaaacgtatcgaagacggtattaatcaggtgcaatgttcagttgcagaataccct
gaagccatcacttacctgttggaacaatatgatcgcgttgaagcgggcgaagctcgtctg
tccgacctgatcatcggcttcgttgaccctaatgccgaagaagatattgcaccaacagca
acccacgtaggttcagaattgtccaccgcagaaatgggcgatgatgaaaacgaagatgaa
gatgaagacgacgacagcgaagacgataacagtatcgatccggaactggcacgtcagaaa
ttctctgacctgcgtgaacaatatgaaaacgcacggaaagaaatcaagaaaaacggtcgt
agccatatcagtgctgcggctgagatcctgaagctttccgaagtattcaagcagttccgc
ttggtacctaagcagtttgactatctggttaacaacatgcgtaccatgatggatcgcgtt
cgtactcaagaacgcattatcatgaaactgtgtgttgaacagtgcaaaatgccgaagaaa
aacttcgtcacactgtttgccagcaacgaaaccagcgatacctggtttgcagcggcgctg
gctatgggtaaaccgtggtcagaaaaactgaaagacgtatcggatgatgtacaacgcagc
ctgcaaaaactgcgtcagatcgaagaagaaaccggtctgacgattgagcaggtaaaagac
atcaaccgtcgcatgtctatcggtgaagccaaagcacgtcgcgcgaagaaagaaatggtc
gaagctaacctgcgtttggttatctctattgctaaaaaatacaccaaccgtggcctacaa
ttccttgatttgattcaggaaggcaatatcggtctgatgaaagcagtagataagttcgaa
taccgtcgcggttataaattctcgacctatgctacctggtggattcgtcaggcgatcacc
cgctctattgccgatcaggcgcgcaccatccgtattccggtacatatgattgagacgatt
aacaaactcaaccgtatatcccgccagatgttgcaggaaatggggcgtgaaccaacaccg
gaagaattggcagaacgtatgctgatgccggaagacaaaatccgcaaagtgctgaagatc
gcgaaagagccgatctctatggaaacgccaattggtgatgatgaagattcgcatctgggc
gatttcatcgaagatacaacgttagagctgccgctggactctgcaacttccgagagcctg
cgttcggcaactcacgatgtgttggctggcctgaccgcccgtgaagctaaagttctgcgg
atgcgttttggtatcgacatgaatactgaccatactttggaagaagtcggtaagcagttc
gatgttacccgtgaacgtattcgtcagatcgaagcgaaggcactgcgtaaattgcgccat
ccaagccgctccgaagttctgcgtagcttcctcgacgactaa
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