Yersinia ruckeri YRB: BD65_1650
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Entry
BD65_1650 CDS
T03611
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
yru
Yersinia ruckeri YRB
Pathway
yru03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
yru00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BD65_1650 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yru03021
]
BD65_1650 (rpoC)
03400 DNA repair and recombination proteins [BR:
yru03400
]
BD65_1650 (rpoC)
Enzymes [BR:
yru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BD65_1650 (rpoC)
Transcription machinery [BR:
yru03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BD65_1650 (rpoC)
DNA repair and recombination proteins [BR:
yru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BD65_1650 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AJI94214
LinkDB
All DBs
Position
complement(1813269..1817489)
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEILREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLSGPKEAERVYRSG
HASLHARVKVRISEEIRTAEGDSVSQTSIIDTTIGRAILWMIVPQGLPYSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEAKAGIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMDNLSVEDVVNSKGEVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHNGIVMTPVIEGGDVKEPLRDRVL
GRVTAEEVIKPGTADILVPRNTLLDEKWCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTLKL
SNAKFVMNAASKLVITSRNTELKLIDEFGRTKESYKVPYGAVMGKGDGAEVQGGETVANW
DPHIMPVVTEVSGFIRFADMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAKGDDVLIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDTLARIPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVVERGDVVSDGPESPHDILRLRGIHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVDAGGTDFLEGEQAEMSRVKIANRKLAAEGKIEATFTRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRKALGDTPV
APQVSADEATANLAELLNAGFGNSKD
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaagaccgaagagtttgacgcgatc
aaaattgctctggcctcgccagacatgatccgttcctggtcgttcggcgaagtgaaaaag
ccggaaaccattaactaccgtacgttcaaacctgaacgtgacggtcttttctgcgcccgt
atctttggcccagtaaaagattacgaatgtttgtgtggtaaatacaagcgtttaaaacac
cgtggcgtcatttgtgagaaatgcggcgttgaagtgactcagactaaagtgcgccgtgag
cgtatgggtcacattgagctggcttctccaactgcacatatctggttcctgaaatccttg
ccttcgcgcatcggtttgttgctggatatgccactgcgtgacatcgaacgtgttctgtac
ttcgaatcctatgtggttatcgaaggcggcatgaccaacctggaacgtcgccagattctg
actgaagagcagtatctggacgcgttggaagagtttggtgatgaattcgacgcgaaaatg
ggcgcagaagcgatccaagccttgttgaaaaacatggatctggaagcggaatgcgagatc
ctgcgtgaagaattgaacgaaacgaattcggaaaccaagcgtaagaagctgaccaagcgt
atcaagttgctggaagcgttcgtacagtctggcaacaagccagagtggatgatcctgacc
gtgctgccggtattgccgccagatctgcgtccattggttcctttggatggtggccgcttt
gcgacttccgatctgaacgatttgtatcgtcgcgtgatcaaccgtaataaccgtctgaaa
cgcctgctggatctggctgctcctgacatcatcgtgcgcaacgaaaagcgtatgctgcaa
gaagcagtagatgcattgctggataacggccgtcgcggtcgtgcaattaccggctcgaac
aagcgtccgctgaaatctctagcagacatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgctgggtaaacgtgttgactactcaggccgttcggtgatcaccgtaggtccatac
ctgcgtctgcatcagtgtggtttgccgaagaaaatggctcttgagctgttcaaaccgttc
atctacggcaagctggaattgcgtggtcttgctaccaccattaaagctgccaagaagatg
gttgagcgtgaagaagcggtcgtttgggatatcctggatgaagttatccgcgaacaccca
gtattgctgaaccgtgcaccaacccttcaccgtttgggtatccaggcgtttgaaccggtt
ctgatcgaaggtaaagccatccagctacatccgctggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagttggaagcg
cgtgcgttgatgatgtcgaccaacaacatcctgtcacctgcgaacggcgagccaatcatc
gttccttctcaggacgttgtattgggtctgtactatatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgagtgggccgaaagaagctgaacgtgtttaccgttctggc
catgcatcactgcatgcgcgagtcaaagtccgtatttctgaagaaattcgtactgcggaa
ggcgacagcgtttcccaaacaagcatcatcgatacgacgataggccgtgctattttgtgg
atgattgttccacaaggcctgccttactctatcgttaaccagccgctgggcaagaaagcc
atttccaagatgctgaacacctgttaccgcatcctgggcttgaaaccaacggttatcttt
gctgaccagatcatgtacaccggttttgcttacgcagcacgctcaggcgcctctgtaggt
atcgatgacatggttatcccagaagcgaaagcagggatcatcgaagaagctgaaactgaa
gttgccgagatccaggaacagttccaatccggtctggtaacagcaggcgaacgttataac
aaagtgatcgatatctgggccgcggctaacgaacgtgttgccaaggcgatgatggacaac
ttatccgttgaagacgtcgtcaacagtaaaggtgaagtggagcaacaggtttccttcaac
agcatctttatgatggccgactccggtgcgcgtggttctgcagcacagattcgtcagctg
gcaggtatgcgtggcctgatggccaagccagatggctcgatcattgaaacgccaatcacc
gcgaacttccgtgaaggtttgaacgtacttcagtacttcatctcaacccacggtgcgcgt
aaaggtttggcggataccgcattgaaaactgcgaactccggttacctgacccgtcgtttg
gttgatgtggcgcaggatctggttgtaaccgaagacgattgtggtacccataacggtatc
gtgatgacgccggttatcgaaggtggtgatgttaaagagccactgcgcgatcgcgttctg
ggtcgtgtgactgcggaagaagttatcaagccgggtacggctgatattctggttccgcgt
aacaccctgttggacgaaaaatggtgtgatctgttagaagaaaactccgtcgacagtgtt
aaagttcgttcagtagtaagctgtgaaactgattttggtgtgtgtgcaaactgctatggt
cgtgacctggcgcgtggccatatcatcaacaaaggtgaagcggttggtgttattgcagcg
cagtccatcggtgagccgggtacccagcttacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagcagagtctagtattcaggttaagaacaaaggtacgctgaaactg
agcaacgccaagttcgttatgaatgcagctagcaagctggttattacttctcgtaatacc
gagctgaagctgatcgacgaattcggtcggactaaagaaagctacaaagtgccttacggt
gccgtaatgggtaaaggcgatggtgcagaagttcagggcggcgaaaccgttgctaactgg
gatccgcatatcatgccagttgtgaccgaagtgagcggcttcatccgcttcgctgacatg
gttgacggccagaccattactcgccagaccgatgagctgactggtttgtcttctctggta
gtactggacagtgcagagcgtaccggtagcggtaaagacctgcgtccagcactgaaaatc
gttgatgccaaaggtgacgacgtattgattccaggtacagatatgcctgctcaatacttc
ctgccaggtaaagcgattgttcagttggaagacggcattcagatcggtgcgggtgatacc
ttggctcgtattccgcaagaatcaagcggtaccaaggatattaccggtggtttgccacgt
gttgctgacttgttcgaagcacgtcgtccgaaagaaccggctatcctggctgaaatcagc
gggatcatctcgttcggtaaagagactaaaggcaagcgtcgtctggtgatctcaccgttg
gatggtagcgatgcatacgaagagatgattcctaagtggcgtcagcttaacgtgttcgaa
ggtgaagtggtagaacgcggtgacgtggtttccgatggcccagaatctccacacgacatt
ctgcgtctgcgtggcattcacgcggttacccgttacatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ctgcgtaaaggtaccatcgttgatgcaggtggcaccgacttcctggaaggcgagcaggca
gaaatgtctcgcgttaaaatcgctaaccgtaagttggcagcagaaggaaaaatcgaggcc
acattcacccgtgacctgctgggtatcaccaaggcatccttggcgaccgagtccttcatc
tctgcggcttcgttccaggaaaccacgcgcgttcttaccgaagcggcagttgccggtaaa
cgtgatgaactgcgtggcctgaaagagaacgttatcgtgggccgtctgattccagccggt
accggttacgcttatcaccaggatcgcatgcgtcgtaaagctctgggtgacaccccagtg
gctccgcaagttagcgcggacgaagcaacggctaacttggctgaattgcttaacgctggc
tttggtaacagcaaagactaa
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