Yersinia ruckeri YRB: BD65_1676
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Entry
BD65_1676 CDS
T03611
Symbol
fadB
Name
(GenBank) fatty oxidation complex, alpha subunit FadB
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
yru
Yersinia ruckeri YRB
Pathway
yru00071
Fatty acid degradation
yru00280
Valine, leucine and isoleucine degradation
yru00310
Lysine degradation
yru00362
Benzoate degradation
yru00380
Tryptophan metabolism
yru00410
beta-Alanine metabolism
yru00640
Propanoate metabolism
yru00650
Butanoate metabolism
yru00907
Pinene, camphor and geraniol degradation
yru00930
Caprolactam degradation
yru01100
Metabolic pathways
yru01110
Biosynthesis of secondary metabolites
yru01120
Microbial metabolism in diverse environments
yru01200
Carbon metabolism
yru01212
Fatty acid metabolism
Module
yru_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
yru00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
BD65_1676 (fadB)
00650 Butanoate metabolism
BD65_1676 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
BD65_1676 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
BD65_1676 (fadB)
00310 Lysine degradation
BD65_1676 (fadB)
00380 Tryptophan metabolism
BD65_1676 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
BD65_1676 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
BD65_1676 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
BD65_1676 (fadB)
00930 Caprolactam degradation
BD65_1676 (fadB)
Enzymes [BR:
yru01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
BD65_1676 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
BD65_1676 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
BD65_1676 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
BD65_1676 (fadB)
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Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
AJI95880
LinkDB
All DBs
Position
1841945..1844134
Genome browser
AA seq
729 aa
AA seq
DB search
MLYQSETLKLHWLENGIAELVFDAPGSVNKLDTKTVASLGEALNVLEKQNELKGLLLRST
KAAFIVGADITEFLSLFNAPPEKLHQWLGFANSVFNRLEDLPVPTLSAITGYALGGGCEC
VLATDFRIASPETRIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIAAGKDVSAADALK
IGLVDAVIVQEKLIPAALSMLNQAIAGKLDWQAARRPKLEPLKLNATEAAMCFTIAKGMV
MKVAGKHYPAPITAVKTIEAAAKLGREGALKLETDSFVPLAGSSVARALVSIFLNDQFVK
GQAKRMTKSISAPRQAAVLGAGIMGGGIAYQSALKGVPVMMKDISEKSLDLGMNEAAKLL
NKQLERGKLDSLKMAKTLATIHPTLNYAGIEQAQIIVEAVVENPKVKAAVLSEVETLIGA
ETVLASNTSTIPINELAKSLKRPENFCGMHFFNPVHRMPLVEIIRGEKTSDKTIATVVAY
ATQMGKTPIVVNDCPGFFVNRVLFPYLYGFGMLVRDGVDFRQIDKVMEKQFGWPMGPAYL
LDVVGIDTAHHAQAVMALGFPERMAKDYRDAIDVLFENQRYGQKNGLGFYRYTQDAKGKP
RKENDETTDALLTTVSQPRKSLSDEEIIARAMIPMINEVVRCLEEGIIASPAEGDMALVY
GLGFPPFHGGVFRYLDTLGTTKYVEMAQRYAELGALYHVPAGLRAKAEHNETYYPVAATL
PDISTDQPA
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgctctaccaaagcgaaacactaaagttgcactggcttgaaaacggtattgccgagttg
gtatttgatgcccccggctcagtaaacaaattagataccaaaaccgtggccagtttaggg
gaagccctaaacgtgcttgaaaaacaaaatgaactcaaagggttgctattacgctcaact
aaagcagcctttattgttggtgcggatatcaccgaatttttgtctctgtttaatgccccg
ccagaaaaattgcatcagtggctgggtttcgcaaatagcgtatttaaccgactggaagat
ttaccggttccaaccctttctgctattaccggctatgcgctgggcggtggctgtgagtgc
gtgttagcaaccgacttccgtattgcatctccagaaacccgtatcggcttacctgaaacc
aaacttggcatcatgcctggctttggcggttcagttcgcttgccgcgcctgttaggggcc
gatagcgctctggaaattattgctgcgggcaaagatgtgagtgccgctgacgcgttaaaa
attggcttggttgatgctgttattgttcaggaaaaacttattcctgcggcattaagcatg
ttgaatcaggcaattgcaggcaagctggattggcaagctgcacgtcgtccgaaattggag
ccgttgaagctgaatgccaccgaagccgccatgtgttttaccattgccaaaggcatggtc
atgaaagtggccggtaaacattatccagcgccaattaccgcagtaaaaaccattgaagct
gccgccaaactgggtcgtgaaggcgcgttaaaactggaaactgacagttttgttccatta
gccggttccagtgttgctcgtgctctggttagtattttcctcaatgaccagttcgtcaaa
ggtcaggcgaaaagaatgacgaaaagcattagcgcaccaagacaggcggccgtgctgggt
gccggaattatgggtggcggtattgcctatcaatccgcgctgaaaggtgttccggtgatg
atgaaagatatcagcgaaaaatcgctggatctggggatgaatgaagctgccaagctactg
aataaacaactggaacgcggaaaactggatagtttaaagatggcaaaaacgcttgccact
atccacccaacgctgaactacgccggtatcgaacaagcccaaattatcgttgaggcggtt
gtagaaaatccaaaggttaaagctgccgtattgagcgaagtggaaacacttatcggcgct
gagacagttctcgcgtcgaatacttcgaccataccaattaatgaattagctaaatcgctt
aaacgcccagaaaacttctgcggtatgcatttcttcaatccagtacatcggatgccattg
gtagaaattattcgcggtgaaaaaacctcggacaaaactatcgctaccgtcgtggcctac
gccactcaaatgggcaaaaccccgattgtggtcaatgactgccctggattcttcgttaac
cgcgtgttgttcccatatttatatggttttggcatgttggttcgcgatggcgtagatttc
cgtcaaattgataaagtgatggagaaacaatttggttggccaatgggcccagcctatctg
ctggatgtggtgggtattgataccgcacatcatgctcaagcggtaatggctctcggtttc
cctgagcgtatggccaaagattatcgtgatgctatcgatgtactgtttgaaaaccaacgt
tatggtcagaaaaatggcctcggtttctatcgctatacacaagatgccaaaggcaagccg
cgtaaagagaacgatgaaactaccgatgcactgctcaccacggttagtcagccgcgcaag
tcactcagtgatgaagaaattatcgcacgcgcaatgatcccgatgatcaacgaagtggtg
cgttgtctggaagaaggcattattgccagcccggctgaaggtgatatggcgttggtgtat
ggactcggtttccctccattccacggcggcgtgttccgttatttggatacgttgggtacc
actaaatatgtggaaatggcgcaacgctacgctgaacttggcgcactttaccatgttccc
gcagggttaagagctaaagccgaacataacgaaacctattatcccgtagcggcgacgctg
ccagatatctccactgaccaaccggcatga
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