Yersinia ruckeri YRB: BD65_1749
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Entry
BD65_1749 CDS
T03611
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
yru
Yersinia ruckeri YRB
Pathway
yru03420
Nucleotide excision repair
yru03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
yru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BD65_1749 (uvrD)
03430 Mismatch repair
BD65_1749 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yru03400
]
BD65_1749 (uvrD)
Enzymes [BR:
yru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BD65_1749 (uvrD)
DNA repair and recombination proteins [BR:
yru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BD65_1749 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
BD65_1749 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
AAA_22
PhoH
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AJI95426
LinkDB
All DBs
Position
complement(1921441..1923603)
Genome browser
AA seq
720 aa
AA seq
DB search
MDVSDLLDSLNEKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIAV
TFTNKAAAEMRHRIEHLIGTSQGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQH
RLLKRIVKALNLDEKQWPPRQAMWYINGKKDEGLRPQHIESYGNPVEATWLRIYQAYQEA
CDRAGLVDFAELLLRAHELWLNKPHILNHYRERFTNILVDEFQDTNSIQYAWIRLLAGER
SNVMIVGDDDQSIYGWRGAQVENIQRFLKDFPGAETIRLEQNYRSTSTILKAANTLIANN
DGRMGKNLWTEGAEGEPISIYCAFNELDEARFVVNRIKAWQDHGGALNDCAILYRSNAQS
RVLEEALLQTSMPYRIYGGQRFFERQEIKDSLAYLRLISNRNDDAAFERVVNTPTRGIGD
RTLDVVRHTARDRQLTLWQATRELLQSQVLAGRAASALQRFVELVDSLAHETADMPLHVQ
TDRVIRDSGLWIMYEQEKGEKGQARIENLEELVNATRQYSYQDEDEDLMPLQAFLSHAAL
EAGEGQADAYQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAY
VGLTRAMQKLTLCYAESRRLYGKEVNHRPSRFIGELPQECIEEVRLRASVTRAVNHRRMG
TPMNENDSGFSLGQRVRHPKFGEGTVVNLEGSGEHSRLQVAFPGEGIKWLVAAYARLEAV
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttctgatctgctcgacagcctgaatgaaaaacaacgcgaagccgtggccgct
ccacgcagcaacctgttggtactggccggtgcgggcagtggtaaaacccgggtgctggtg
catcgtattgcctggctgctctctgtggaaaatgcttcgccgtattccattattgctgtg
acttttaccaataaggcggcggcagaaatgcgccatcggattgagcatctgattggtacc
agccaaggcggtatgtggatcggaaccttccacggtttggcacaccgtttgctgcgcgct
catcatttggatgccaatctaccgcaggattttcaaatcctcgacagcgacgaccagcac
cgcttactgaaacgtattgttaaggcactgaatcttgatgagaaacagtggccaccgcgt
caggcgatgtggtacatcaatggtaaaaaagacgaaggcctgcggcctcaacacattgaa
agttatggtaacccggttgaggcgacctggctgcgtatttatcaggcctatcaggaagcc
tgcgatcgtgccggtttggtggattttgccgagttattgctgcgcgcccatgagctttgg
ctgaataaaccgcatattttgaaccactatcgtgaacgctttaccaacattctggttgat
gagttccaagataccaacagcatccagtacgcgtggattcgcctgctggcgggtgaacgt
tccaatgtgatgatcgtgggcgatgatgaccagtcaatctatggctggcgcggtgcgcag
gttgagaatattcaacgcttcctgaaggattttcccggtgcggaaaccatccgtctggag
cagaactatcgttcgaccagtaccatcctgaaggctgccaataccctgattgccaacaat
gatggccggatggggaaaaatttgtggactgaaggtgctgaaggcgagccgatctcgatt
tattgtgcgtttaacgagctggatgaagcgcgttttgtggttaaccggattaaagcctgg
caggatcacggtggggcactcaatgattgcgccattttgtaccgcagtaacgcccaatcc
cgtgtgttagaagaggctttgctgcaaacttcaatgccgtatcgcatttatggcggtcaa
cgcttcttcgaacggcaggaaatcaaagactctctggcttatctgcgcttgatttcgaac
cgcaatgacgatgcggcttttgagcgggtagtgaatacgccgactcgcggcattggcgat
cggacattggatgtggtgcggcacactgcacgggatcgtcagcttaccttgtggcaggcg
actcgtgagttattgcaaagccaagtactggcggggcgtgcggcttctgctttacagcgt
tttgttgaactggtggattcactggctcacgaaaccgctgatatgccattacatgtgcaa
accgatcgggtcattcgtgattccgggctgtggatcatgtatgaacaggaaaaaggcgaa
aaaggccaggctcgtattgagaaccttgaggaactggtcaacgcgacgcgtcagtacagc
tatcaggatgaagatgaagacttgatgccattgcaggcgttcttgtctcacgcagcgctg
gaggccggcgagggccaggctgatgcctatcaggatgcggtgcaattgatgacgttgcac
tcggccaaagggttggaattcccacaggtatttattgtcggtatggaagagggcatgttt
ccgagccagatgtcgctggatgaaggtggacgtttggaggaagagcgccgtctggcttat
gtcggattaactcgcgcaatgcaaaaactgacgctctgctatgcagaaagtcgccgtttg
tacggtaaagaagtgaatcatcgtccttctcgtttcatcggcgaattgccgcaggaatgt
attgaagaggtgagactacgcgctagcgtgacgcgtgcggtcaatcatcgccggatggga
acaccaatgaatgagaacgatagcggcttctcgttggggcagcgggttcgtcatcctaaa
ttcggtgaaggtacggtggtgaatctggaaggcagtggtgagcatagccgcttacaggtt
gcctttcccggtgaagggatcaagtggctggtggcggcctatgcgcggctcgaagccgtg
taa
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