Yersinia ruckeri YRB: BD65_1956
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Entry
BD65_1956 CDS
T03611
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
yru
Yersinia ruckeri YRB
Pathway
yru03030
DNA replication
yru03410
Base excision repair
yru03420
Nucleotide excision repair
yru03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
yru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BD65_1956 (polA)
03410 Base excision repair
BD65_1956 (polA)
03420 Nucleotide excision repair
BD65_1956 (polA)
03440 Homologous recombination
BD65_1956 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yru03032
]
BD65_1956 (polA)
03400 DNA repair and recombination proteins [BR:
yru03400
]
BD65_1956 (polA)
Enzymes [BR:
yru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BD65_1956 (polA)
DNA replication proteins [BR:
yru03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BD65_1956 (polA)
DNA repair and recombination proteins [BR:
yru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
BD65_1956 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BD65_1956 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH
Prok-E2_E
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AJI94789
LinkDB
All DBs
Position
complement(2133355..2136159)
Genome browser
AA seq
934 aa
AA seq
DB search
MAQIAENPLILVDGSSYLYRAYHAFPPLTNASGEPTGAMYGVLNMLRSLLLQYHPSHVAV
VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLAVSGVEADDVIGT
LAQEAEKAGYSVLISTGDKDMAQLVTPNITLINTMNNTILGPEEVREKFGVPPALIIDFL
ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYSNLDKIASLTFRGAKTLSAKLEQNK
DVAYLSYQLATIKTDVELEVSCGELIVSTPDIDQLHTLFARYEFKRWLVDLEGGKWLEGN
KARPTGTGKSDNKASDMVVATPTAEVTALLPQENYQTILDEETFLIWIERLKQAEVFAFD
TETDGLDTLSANLIGLSFAIAPGEAAYLPVAHDYLDAPAQLDRSWVLTTLKPLLEDEQAL
KVGQNLKFDKSLLARYGIELRGIAFDTMLESYVLNSVAGRHDMDSLSERYLNHKTITFEE
IAGKGKNQLTFNQIALEQASPYAAEDADVTLQLHLAMWPKLQESEDLLRVYQQIEMPLLP
ILSRIERTGVLIDQSILATHSQELTIRLTELEKQAHELAEEPFNLASPKQLQAILYEKQK
LPILKKTPGGAASTNEEVLAELALDYPLPKVLLEYRGLAKLKSTYTDKLPLMINPISGRV
HTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPAGYCILAADYSQIELRIMA
HLSQDKGLLAAFAEGKDIHRATAAEVFGLPLENVTTEQRRSAKAINFGLIYGMSAFGLAR
QLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNANR
RKAAEREAINAPMQGTAADIIKRAMIAVDAWLQQQAEPLVRVIMQVHDELVFEVHESVVE
SATQTICDLMEQSMQLDVPLKVEVGVGKNWDQAH
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaatcgcagaaaaccccttgatattggttgatggttcctcctacctctaccgc
gcttaccatgctttcccgccgctgactaacgccagtggggagccgaccggagcgatgtac
ggcgtgttgaatatgcttcgcagcctgttgttacagtatcatccaagtcatgttgcggtt
gtctttgatgccaaaggaaaaaccttccgcgacgaactctttgctgaatataaatcccat
cgcccaccgatgcctgatgatctgcgtgcacagatagaaccactgcatcaaatggtgaaa
gccatgggtttaccgttgctagctgtatctggcgtcgaggctgatgacgtcattggtact
ttggcgcaggaggccgaaaaagcgggttactccgtattgatcagtactggtgataaagat
atggcgcagttagtgacgccaaatatcactctgataaatacgatgaataacactattctt
ggcccagaggaagtgcgagagaagtttggtgttccacctgcgttgattatcgattttctg
gctttaatgggggattcatccgataacattcccggcgttcccggcgtgggagaaaaaaca
gcgcaggcactgctgcaaggtctgggcggcttggatacgttgtacagtaatctggataag
atcgcttcgctaaccttccgtggtgcgaagaccctgtctgccaagctggaacagaataag
gatgttgcctacctctcttatcagttggcgacgatcaagactgacgttgagctagaggtg
agttgtggcgaattgatcgtgtctacacctgatatcgatcaactgcatacgctgtttgct
cgttatgaatttaagcgctggctagttgatttagaaggtggtaaatggctcgaaggcaat
aaagctcgtccaacgggcaccggtaagagtgataataaggcttctgatatggtggttgcg
acacctaccgcagaagtgaccgctttactcccgcaagagaactatcaaaccattctggat
gaagagacatttttaatctggatagaacgtctgaaacaggccgaggtgtttgcttttgat
actgaaaccgatggcttggatacattaagtgccaatcttatcggcttatcatttgctatt
gcacctggagaagccgcttatttgccggtagcgcatgattatcttgatgcacctgcacag
cttgatagaagttgggtattgaccacgctcaaaccgttgctagaagatgaacaggctctt
aaagtcgggcagaacctgaagttcgataagagcctattagctcgttatggtatagagctg
cgcggtattgcctttgatactatgctggaatcctatgtactaaacagtgttgctggccgt
catgatatggacagtctctctgagcgctacctcaatcataaaactattacttttgaagag
attgctggaaaaggtaagaatcagttaacctttaaccaaattgctttggagcaggcatcg
ccttatgcggcggaagatgccgatgttacgttgcagttacatttggcgatgtggccaaaa
ctccaggaaagcgaagacttgctgcgggtataccagcagattgaaatgccgttactgccc
attctttctcgaattgaacgcaccggcgttctgattgaccaatctattctggcgacccac
tctcaagagctgacgatacgtctgaccgagttggagaaacaagcccatgaattggcggaa
gaaccgtttaatctggcctctcctaaacagctacaggcgattctgtatgaaaaacagaaa
ctgccaatcctgaaaaaaacgcctggtggcgcagcgtcaacgaatgaagaagttttggct
gaactggcgttggattatccattgccgaaggtgcttcttgagtatcgtggactggccaag
ctaaaaagcacctataccgataaattgcctttgatgattaatccgatttccgggcgggtg
catacttcataccatcaggcagtaacggctacggggagattgtcatcccgtgatcctaac
ttgcaaaacattccggtcagaaatgaggaagggcgtcgtattcgtcaggcatttattgct
ccggcgggttactgcattcttgctgccgattactctcaaattgagctgcgtattatggcg
catttatcacaagataaagggttgctagccgcttttgccgagggtaaagacattcaccgt
gccacggctgcggaagtctttggtttgccgttagagaatgtcacgaccgagcagcgtcgc
agcgccaaagcgattaacttcggcctgatttatggcatgagtgcttttggtctggctcgt
cagttgaatattcctcgtggcgaagcccaacgttatatggatctttatttcgagcgttat
cctggcgtcttggaatatatggagcggacgcgcaagcaagcggcagatcaaggctatgtt
acgactctggatggtcgtcgactctatttgccagatattcactctcgtaacgccaaccga
cgcaaagctgcggagcgtgaagcgattaacgcaccgatgcagggtaccgctgccgatatt
atcaaacgggcaatgattgccgttgacgcttggttacagcaacaggctgaacctttggtt
cgggtgatcatgcaggtacacgatgaattggtgtttgaagtacatgaaagtgttgtggaa
tctgcgacacagacgatttgcgatctgatggaacaaagtatgcagttggatgtgccgctg
aaagttgaagtcggtgtgggaaaaaattgggatcaggctcactaa
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