KEGG   Yersinia ruckeri YRB: BD65_2294
Entry
BD65_2294         CDS       T03611                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
yru  Yersinia ruckeri YRB
Pathway
yru02024  Quorum sensing
yru03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:yru00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BD65_2294 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    BD65_2294 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:yru03019]
    BD65_2294 (hfq)
   03036 Chromosome and associated proteins [BR:yru03036]
    BD65_2294 (hfq)
Messenger RNA biogenesis [BR:yru03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     BD65_2294 (hfq)
Chromosome and associated proteins [BR:yru03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    BD65_2294 (hfq)
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: AJI95567
LinkDB
Position
2509161..2509466
AA seq 101 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQVESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNNPSGGTNNYHGSNPSAQQQPQQDSDDAE
NT seq 306 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttgcaagatccgttcctgaacgcattgcgtcgtgaacgggtt
ccggtttctatttatttagtgaatggcattaaactgcagggccaagttgagtctttcgat
cagtttgtcattctgttgaaaaacacagttagtcagatggtgtataagcacgctatctct
actgttgttccgtctcgcccggtatcgcatcacagcaataatccgagtggcggcactaat
aattatcatggtagtaatccgtctgcgcagcaacagccgcagcaggatagcgatgacgct
gagtaa

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