Yersinia ruckeri YRB: BD65_2359
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Entry
BD65_2359 CDS
T03611
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
yru
Yersinia ruckeri YRB
Pathway
yru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BD65_2359 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yru03019
]
BD65_2359 (pnp)
03016 Transfer RNA biogenesis [BR:
yru03016
]
BD65_2359 (pnp)
Enzymes [BR:
yru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BD65_2359 (pnp)
Messenger RNA biogenesis [BR:
yru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BD65_2359 (pnp)
Transfer RNA biogenesis [BR:
yru03016
]
Prokaryotic type
tRNA degradation factors
BD65_2359 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
OB_RRP5_4th
KH_2
aRib
KH_SLS1_2
UPF0181
KH-I_KHDC4-BBP
S1_RRP5
Spt6_S1
DUF4172
Motif
Other DBs
NCBI-ProteinID:
AJI95968
LinkDB
All DBs
Position
2573694..2575814
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AA seq
706 aa
AA seq
DB search
MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT
VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSV
NPQVNPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVA
GTAAAVLMVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQPEAVNE
VLYARVKELASARLGDAYRITEKQERYTQVDAIKANVIEALLAQDETLDTSEIQDILGSV
EKDVVRSRVLRGEPRIDGREKDMIRGLDVRTGILPRTHGSALFTRGETQALVTATLGTAR
DAQNIDELMGERTDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSE
FPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDEENFVVLSD
ILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQEALSQAKGARLHILGVMEQA
ISTPRGDISEFAPRIYTMKINSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTIKIAAT
DGEKAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVMEVDRQGRIRLSIKEATTPDAEAPAPEAAE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
ttgctgactccgattattcgtaagttccagtacggccaacacaccgtgaccattgaaacc
ggtatgatggctcgccaggcaacggctgccgttatggtaagcatggatgacaccgcagta
tttgttactgttgttggccagaaaaaagccaagccaggccaaagtttcttccctctgaca
gttaactatcaggagcgtacctacgctgctggtcgtatcccgggtagcttcttccgtcgt
gaaggccgtccgagcgaaggcgaaaccctgacttctcgtctgattgaccgcccgattcgc
cctctgttcccagaaggtttcctgaatgaagttcaggttattgcgactgttgtttccgtt
aacccacaggttaacccggacatcgttgctctgatcggtgcctctgcagctctgagcctg
tcaggtattccattcaacggcccaattggtgctgcacgtgttggtttcatcaatgaccaa
tatgttctgaacccaacgaccgatgagctgaaagaaagccgtctggatctggttgttgct
ggtactgctgcggcagtattaatggttgaatctgaagctgacattctgagcgaagatcaa
atgctgggtgccgttgtctttggccacgaacagcaacaagttgtgatcgaaaacatcaat
gcactggttgctgaagcaggcaagcctaagtgggattggcagccagaagcagttaacgaa
gtgctgtatgcacgcgttaaagaactggcaagcgcacgtctgggtgatgcctaccgcatc
actgagaaacaagagcgttacactcaggttgatgccatcaaagctaatgtaatcgaagcg
ctgttggcacaagacgaaactctggatacttctgaaattcaggacattttgggtagcgta
gagaaagatgtggttcgtagccgcgttctgcgtggcgagccgcgtattgatggtcgcgaa
aaagacatgatccgtggtctggacgttcgtactggcatattgccacgtacccatggttca
gcactgttcactcgtggtgaaactcaggcgctggttaccgcgactttgggtacggcacgt
gacgcgcaaaatattgatgagctgatgggtgagcgtactgactcattcctgctacactat
aacttccctccttactctgttggtgaaacaggtatggtcggttcaccgaagcgtcgtgag
attggccatggccgtctggcgaaacgcggtgtattggcagttatgccaagcccgagcgag
ttcccttataccattcgtgtggtttcagaaatcacggaatctaacggttcttcctcaatg
gcttctgtttgtggcgcttctttggctctaatggatgccggcgtaccaattaaagcagcc
gttgcgggtatcgcgatgggtctggttaaagatgaagaaaactttgttgtcttgtccgac
atcttgggtgatgaagaccatctgggtgatatggactttaaagtagccggtagccgtgaa
ggtattaccgcgttacagatggacattaaaatcgaaggcattacccgcgaaatcatgcaa
gaagcgctgagccaggccaaaggtgcacgtttgcacattctgggtgttatggaacaggct
atcagcacaccgcgtggtgatatctccgagtttgctccacgtatctacaccatgaagatc
aattctgacaaaatcaaagatgtgatcggtaaaggtggttctgtgattcgtgcgctgact
gaagaaacagggacgaccatcgaaatcgaagatgatggcaccattaagattgcagcaact
gatggcgaaaaagcgaagcatgctatccgccgtatcgaagaaattactgctgaaatcgaa
gtgggtcgtatttacgcgggcaaagtgactcgtatcgttgatttcggtgcgtttgttgct
atcggtggtggtaaagaaggtctggttcatatttctcaaatcgctgacaagcgtgtagag
aaagtgactgattacctgcaaatgggccaagaagtgccagttaaggtaatggaagtggat
cgtcagggtcgtattcgtctgagcattaaagaagccacgacgcctgatgcagaagctcca
gcaccagaagcagcagagtaa
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