Yersinia ruckeri YRB: BD65_2513
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Entry
BD65_2513 CDS
T03611
Symbol
carB
Name
(GenBank) carbamoyl-phosphate synthase, large subunit
KO
K01955
carbamoyl-phosphate synthase large subunit [EC:
6.3.5.5
]
Organism
yru
Yersinia ruckeri YRB
Pathway
yru00220
Arginine biosynthesis
yru00240
Pyrimidine metabolism
yru00250
Alanine, aspartate and glutamate metabolism
yru01100
Metabolic pathways
yru01110
Biosynthesis of secondary metabolites
yru01240
Biosynthesis of cofactors
Module
yru_M00051
De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP
Brite
KEGG Orthology (KO) [BR:
yru00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
BD65_2513 (carB)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
BD65_2513 (carB)
00220 Arginine biosynthesis
BD65_2513 (carB)
Enzymes [BR:
yru01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.5 Carbon-nitrogen ligases with glutamine as amido-N-donor
6.3.5.5 carbamoyl-phosphate synthase (glutamine-hydrolysing)
BD65_2513 (carB)
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Gene cluster
GFIT
Motif
Pfam:
CPSase_L_D2
CPSase_L_D1
CPSase_L_D3
MGS
ATP-grasp
Dala_Dala_lig_C
ATP-grasp_3
ATP-grasp_4
ATPgrasp_Ter
CoA_binding_2
BamE
Motif
Other DBs
NCBI-ProteinID:
AJI94763
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Position
2760102..2763335
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AA seq
1077 aa
AA seq
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MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM
ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERHGVLAEFGVTMIGATA
DAIDKAEDRRRFDIAMKKIGLDTARSGIAHNMEEALAVAADVGFPCIIRPSFTMGGTGGG
IAYNREEFEEICERGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM
GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFSVNPKTGRLIVIEM
NPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELTNDITGGRTPASFEPSIDYVVTKIP
RFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEA
LTKIRRELKDAGAERIWYIADAFRAGMSVDGVFNLTNVDRWFLVQIEELVRLEENVAECG
INGLTEDFLRQLKRKGFADARLAKLVGVAESEVRKLRYKFNMHPVYKRVDTCAAEFSTDT
AYMYSTYEEECESNPTSDRPKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVN
CNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPQGVIVQYGGQTPLKLARELEAAGVP
VIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVDKAAGLGYPLVVRPSYVL
GGRAMEIVYDEVDLRRYFQNAVSVSNDAPVLLDRFLDDAVEVDVDAICDGERVLIGGIME
HIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRGLMNVQFAVKNNEVYLI
EVNPRAARTVPFVSKATGMPLAKIAARVMVGKSLAEQGITEEIIPPYYSVKEVVLPFNKF
PGVDPILGPEMRSTGEVMGVGRTFAEAFSKAMLGSQSGMKKSGRALLSVREGDKARVVDL
AAKLLKQGFELDATHGTAVVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIVNTTAGR
QAIEDSKLIRRSALQYKVHYDTTLNGGFATAMALNADPTEQVISVQEMHARIKQMQG
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaacgtacagatatcaaaagcatcctgattctcggtgctggcccgatcgttatc
ggccaagcctgtgagttcgactattcgggcgcgcaagcctgtaaagcactgcgtgaagaa
ggttatcgggtcattttggttaactctaacccggcgactatcatgaccgacccggaaatg
gccgatgcgacttacatcgagccgattcactgggaagtagttcgcaaaattatcgaaaaa
gaacgtccagatgcggttttaccgaccatgggtgggcaaacggcgctgaactgtgctctg
gagctggaacgtcacggcgtgttggccgagtttggtgtgaccatgattggggctaccgcc
gatgcaattgataaagcagaagaccgccgccgttttgatatcgcgatgaagaaaattggt
ctggataccgcgcgctctggcattgcccacaatatggaggaagcgctggcggtggcggct
gacgttggcttcccatgtattatccgtccgtcctttactatgggcggtaccggcggcggt
attgcctacaaccgcgaagagttcgaagaaatttgcgagcgcggtctggatttgtcacca
accaaagagctgttgattgacgaatcgctgatcggttggaaagagtacgagatggaagtg
gtgcgtgataaaaacgacaactgcatcattgtttgttccattgaaaacttcgacgctatg
gggattcataccggtgactcgatcaccgttgcacctgcgcaaaccctgaccgataaagaa
tatcaaatcatgcgtaacgcctcgatggcggtactgcgtgaaatcggcgtagaaaccggc
ggttccaatgtacagttctcggttaacccgaaaactggtcgtctgattgtgattgaaatg
aacccgcgtgtatctcgctcctcggcgctggcatctaaagcaaccggcttcccaattgct
aaaattgccgccaaactggcggtgggttacacgttggatgaactgaccaatgacatcacg
ggtggccgtactccagcctcttttgaaccctctattgactacgttgtgaccaagattcct
cgcttcaacttcgaaaaatttgctggggccaacgaccgtctgaccactcagatgaaatct
gtgggtgaagtgatggcgattggccgcactcagcaagaatctttgcagaaagccctacgt
ggtctggaagtgggtgccaccggttttgacccgaaagtcagcctggatgacccggaagca
ttgaccaagattcgccgagagttgaaagacgccggtgcggagcgtatctggtatatcgcc
gatgctttccgcgcaggtatgtctgttgatggtgttttcaatctgaccaacgttgatcgc
tggttcctggtgcagattgaagagctggttcgtttggaagaaaacgtcgctgaatgcggt
atcaatgggttaaccgaagatttcctgcgtcaactgaagcgtaaaggttttgctgatgct
cgcttggctaaattggttggcgtcgcagaaagtgaagtgcgtaaactgcgttacaaattc
aatatgcatccggtttacaaacgtgtagatacctgtgcggcagagttttctaccgatact
gcctacatgtactcgacctacgaggaagagtgtgaatccaacccaaccagtgaccgcccg
aaaattatggtgctaggtggtggcccgaaccgtatcggccaaggcatcgagttcgactac
tgctgcgtccatgcctctctggctctgcgtgaagacggttacgaaaccatcatggttaac
tgtaacccagagacggtctcaacggattacgacacgtctgaccgtctgtattttgagtcg
gtgaccttggaagacgtactggaaattgtacgtatcgagaaaccacagggcgtaattgta
cagtacggtgggcaaactccactgaaactggcgcgtgaattagaagccgcaggcgtaccg
gttatcggtaccagcccggatgcgattgaccgtgctgaagaccgtgagcgtttccagcag
gcggttaaccgtctgggtctgaaacagccggcgaatgccaccgttgcgactatcgaacaa
gcggtagacaaggccgcaggtctaggctatccgctggtggtgcgtccttcttatgtgttg
ggcgggcgtgcgatggaaattgtgtatgacgaagttgatctgcgtcgttacttccagaat
gcagtgagtgtctccaatgatgcaccggtgctgctcgaccgtttccttgacgatgcggtt
gaagtggacgtggatgcgatctgcgatggcgaacgtgtgctgattggcggcatcatggag
cacattgagcaggctggcgtccactccggtgactctgcgtgttctctgccagcttacacc
ctgagcaaagaaattcaggatgttatgcgtcagcaagttgagaaactggcatttgaactg
tgcgttcgcggtctgatgaacgtccagtttgcggtgaagaacaatgaagtttacctgatt
gaagttaacccacgagcggcgcgcaccgtgcctttcgtatccaaagcaaccggtatgccg
ttggctaaaattgccgcccgcgtgatggtgggtaaatcgttagctgaacaaggtattacc
gaagaaatcatcccgccgtactactcggtaaaagaagtcgtattgccgtttaacaaattc
cctggtgtagatcccattcttggacctgaaatgcgctctaccggtgaagtgatgggggtt
ggccgcacttttgcagaagccttctcgaaagcaatgctgggcagtcagtctgggatgaag
aaaagcggccgcgcattgttgtcggtacgtgaaggcgataaagctcgggtggttgatttg
gccgctaagctgttaaaacagggctttgaactagatgcaactcacggtactgcggttgta
ctgggtgaagcgggtatcaatccacgtctggttaataaggtgcatgaaggtcgtccgcac
attcaggatcgtattaagaatggcgaatacacttatattgttaataccaccgcggggcgt
caggctattgaagactccaagctgattcgccgtagtgcattgcagtataaagtacactac
gacaccacgttgaatggtggctttgcgacagcgatggcgctaaatgcggatccaactgag
caggtgatttcggtgcaggaaatgcatgccaggattaagcaaatgcaaggctga
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