Yersinia ruckeri YRB: BD65_2788
Help
Entry
BD65_2788 CDS
T03611
Name
(GenBank) exonuclease SbcC family protein
KO
K03546
DNA repair protein SbcC/Rad50
Organism
yru
Yersinia ruckeri YRB
Brite
KEGG Orthology (KO) [BR:
yru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yru03400
]
BD65_2788
DNA repair and recombination proteins [BR:
yru03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BD65_2788
Archaeal homologous recombinant proteins
BD65_2788
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
ABC_tran
cobW
nSTAND3
TsaE
AAA_21
GTP_EFTU
RsgA_GTPase
Motif
Other DBs
NCBI-ProteinID:
AJI94257
LinkDB
All DBs
Position
complement(3071014..3074697)
Genome browser
AA seq
1227 aa
AA seq
DB search
MKILSLRLKNINSLQGEWKIDFTAEPFASNGLFAITGSTGAGKTTLLDAICLALYHQTPR
IKVSPSQNELMTRHTAESLAEVEFEVKGVSYRAFWSQRRAKNSPEGNLQAPKVELALCQD
GTILADKVGDKLSQIAAITGLDFGRFTKSMMLSQGQFAAFLNADANDRAELLEELTGTEI
YGRLSEQVFEQHKQAKTELDTLYLRANGIELLNEDQRQTLQSELDALHQQEQQFGAELLA
LQHQIAWITSLQQQQQHIQQCNQQRQQVELEYQQAEPDLLRLARSEPAEKLRPLQIARNQ
CLQDLQQTQQRIAEITQQQQQYQFRLTPLTLAFEQATKARQQHTAVQDEQEKIIEQQIIP
LDNQIDNQKKLLAQLDLQLQQLQAKTQQDTQQFEQDEQRLQTIHQRLRQLTDYAISHTHH
QQWEKNLPLWREQFHQLHLQRQLLADGTQQLQQKITLIDTQQQQITVLNQQEKQQQTTLV
EAEKLAGNIQQQLLLLEQQSPQAPLRQRLGELNEQRRSRLELAKLSPLAQQIQARHDQQR
QQFSTQQQQLDVLKQQLEEKRQQYQQQKQHLTDLEALYEREKQIVTLEAERTRLQAGQSC
PLCGALEHPAIAEYQALKPSETALRVAALRKQVEALYTAGSELRAQSESLRQNQARLDQE
LQQSSQLLADYQQTWQALTQPLALTFQLNEPILLTTWLEQQEQQEQDCQRKLAEYEHLQQ
QSQQAKNTLTLAEQSQQKNRQDITLLQQRLSDTQQAHKELQQSYQRQQGEFKARQQAFID
ALAKLGLQLPAPEQQQNWLNQRESEWQRWQQHQQEQQDLVLRQKMLETRLESQRSHLQEA
NEQLAELTRQHQQIGDDLKQQIKHRQSLFGDRMVAEVRQTLRQQQQQLELAQQKAADELQ
QWQSQLSRLSGELAMLDQQLQQYQLRASASQTALQQALANSEFSDEQTLTAALLSDDERQ
RLQQWQQQLSQRRQQADIRQQQASEALARHIQTCPSGIDQHTDLADLQQRSDQLSTQRKT
STLRQGELRNQLESDAIRRVTQSALFDKIENSQQQYDDWSYLNHLIGSKEGDKFRKFAQG
LTLDHLVYLANNQLTRLHGRYLLQRKTNDALELLVVDTWQADAIRDTRTLSGGESFLVSL
SLALALSDLVSHKTSIDSLFLDEGFGTLDAETLDTALDALDSLNATGKTIGVISHVEAMK
ERIPVQIKVKKINGLGISRLDSIFAVN
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattttaagtttacgcctaaaaaacattaactcgctacaaggcgaatggaagatt
gattttaccgctgagcccttcgccagcaatggtctgtttgccattactggctcgactggc
gcaggaaaaaccacactgctggatgctatctgtttagcgttatatcaccaaactccgcgg
ataaaagtttcacccagccagaatgaattgatgacccgtcacactgcagaatcgctggct
gaagtcgaatttgaggtaaagggtgttagctatcgcgcattctggagccagcggcgagcc
aaaaactcacccgagggcaacttgcaggcacctaaagtcgaactggctttgtgccaagat
ggcactattctggccgataaagtgggagacaaactctcgcagatagctgctatcaccgga
ttggattttggtcgatttaccaaatcgatgatgctatcccaaggtcagttcgccgccttc
ctgaacgctgatgccaacgatcgcgcagagttattggaagagttaaccggaactgaaata
tacgggcggctatcagaacaggtttttgagcagcacaaacaggctaaaaccgaattggat
acactgtatcttcgcgccaacggcatcgaattgctcaatgaagatcagcgacaaacatta
cagtcagaactcgacgcactgcaccaacaagaacagcagttcggcgctgaactactcgct
ttacaacatcagatcgcctggatcacgtccttgcagcaacaacagcaacatatacagcaa
tgtaaccagcaacgacagcaagttgaactggaatatcagcaagcagaacctgacctgcta
cggctggcgcgcagtgaacccgctgaaaaactgcgccctttgcaaatcgcgcggaatcag
tgcttgcaagacctgcaacaaacgcaacaacgcatagcagaaataacgcaacaacagcag
caataccaattccggcttacgccgctgacgctggcttttgaacaagcgaccaaggctcgc
caacaacatactgcagtgcaagacgaacaagaaaaaatcatagaacaacagattattcct
ctggataatcagatagataaccagaaaaaactgttggctcaactggatctacagttgcaa
caattgcaggccaaaacacagcaagatacccagcagttcgagcaagacgaacagcggtta
caaacaatacatcagcggttacggcagttgactgactatgccatcagtcacactcatcat
cagcaatgggaaaagaacctgccgctgtggcgggagcaattccaccaactgcatctgcaa
aggcaattactcgccgatggcacgcaacagttgcagcaaaaaatcacactaattgacact
caacaacagcaaatcaccgtacttaaccagcaagaaaaacagcaacaaacaaccttggtc
gaagcggaaaaactggcaggcaatattcaacaacaactattactacttgagcaacagtct
ccacaagctccattgcgccaacgacttggcgagctgaatgaacagcgaagaagtcgacta
gaacttgccaaattatcgccgctggctcaacaaatacaggctaggcatgatcaacagcga
caacagttctctactcaacaacagcaacttgatgttcttaaacagcagcttgaagaaaaa
cggcagcagtaccaacagcagaaacagcatcttacggatctagaagcattgtacgagcgt
gagaagcagatcgtgacgctggaagccgaaagaacccgattacaggcaggccaatcctgc
ccactgtgtggcgcactggaacaccccgcgattgcggaatatcaggcactcaagccgtcc
gaaacagcgctacgcgttgctgccctgcgtaagcaagttgaagctctgtacactgctggt
agcgagttacgcgcccagtcagaaagcttgcggcaaaatcaggcgcgtctggatcaggaa
ctacagcaaagcagtcagttacttgctgattatcagcagacctggcaagcactgacacag
ccgctggcgctaacattccagctcaatgagccgatcttgctgactacctggctggaacaa
caagaacaacaagagcaggattgtcagcggaaactggcagagtatgagcacctgcagcaa
cagagccaacaggctaaaaatacattaaccctggcagagcaaagccaacagaaaaaccga
caggacatcaccctactgcaacagcgactatcggatactcagcaagcccacaaagagttg
caacagtcctatcaacgccagcagggtgaattcaaagcacggcaacaggctttcattgat
gcattagccaaactgggactccagttaccggctccagagcagcaacaaaattggttgaat
caacgggaaagtgaatggcagcgttggcaacagcaccaacaggaacaacaggatttggtt
ctacgacaaaaaatgctggagacccgccttgaaagtcaacgtagccatttacaggaagct
aacgagcagctagccgaactgactcgacaacatcagcagattggcgatgacttaaagcaa
cagattaaacaccggcagtctctatttggtgaccgaatggttgccgaagtgcgccagact
ttgcgtcaacaacaacagcaactggaactggcgcagcagaaagccgctgatgagttacaa
caatggcaatcgcagctaagccgtctttccggtgaactggcgatgctggatcaacagtta
cagcaatatcagttgcgggcgtctgcctctcaaacggcattgcaacaagcattggcaaac
agtgaatttagtgacgaacagacactgacagcggcattattaagtgacgatgaaagacag
cgcttacagcagtggcaacaacaattgagccaacgtcgacaacaagcagatatccgtcaa
caacaagcgagtgaagcgctggcacgacatatacagacttgcccatcggggattgatcag
cataccgatttagccgatctgcaacaacgatcagatcagctatctacccaaagaaagacc
agtacgctacgacagggagaattgcgtaatcaattagagagcgacgccattcgtcgggta
acccagtcggcattgtttgataaaatagaaaatagtcagcaacaatacgatgattggagt
tatctcaatcacttaatcggttcaaaagaaggcgataaattccgcaaatttgcacaaggt
ctaacgctcgatcacctggtttatctggccaataaccagttaacacggctacacggacgc
tatctactacaacgcaagaccaatgatgcactggaactcttggtggttgatacctggcag
gctgatgccattcgggatacccgaacgctttcgggaggagaaagtttcctggtcagccta
tcgctggcactagcactgtcggatctggttagtcataaaaccagtattgactcattgttc
cttgatgaaggttttggaacgcttgatgcggaaacactggatacggctctggatgcgctg
gacagtctgaacgctaccgggaaaactattggtgtgatcagtcatgtggaggcaatgaaa
gaacgaataccagtacaaattaaagtgaagaaaattaacggattgggcattagtcggctg
gacagtatttttgctgtaaattaa
DBGET
integrated database retrieval system
