Yersinia ruckeri YRB: BD65_294
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Entry
BD65_294 CDS
T03611
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
yru
Yersinia ruckeri YRB
Brite
KEGG Orthology (KO) [BR:
yru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yru03032
]
BD65_294 (topA)
03400 DNA repair and recombination proteins [BR:
yru03400
]
BD65_294 (topA)
Enzymes [BR:
yru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BD65_294 (topA)
DNA replication proteins [BR:
yru03032
]
Prokaryotic type
DNA Topoisomerases
BD65_294 (topA)
DNA repair and recombination proteins [BR:
yru03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BD65_294 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
AJI95441
LinkDB
All DBs
Position
325646..328261
Genome browser
AA seq
871 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSASKKSANSTEDKTKQEDK
PKKKVKKDEKVALVNRMGVDPYHGWKAQYEILPGKEKVVAELKALAENADHIYLATDLDR
EGEAIAWHLREVIGGDDKRFSRVVFNEITKNAIQQAFNQPGELNINRVNAQQARRFMDRV
VGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREKDIKAFVPEEYWELHADLLAKGEIPI
QMEVTHAHNKPFKPVNREQTHAALTLLENARYQVLDREDKPTSSKPGAPFITSTLQQAAS
TRLSFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQDALTMVRGYIGDNFGDKYLPPSANQ
YSSKENSQEAHEAIRPSDVNVLAEQLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLT
VQAGDYQLRAKGRTLRFDGWTKVMPALRKGDEDRTLPVIEVGSELDLQKLIPSQHFTKPP
ARYSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENF
RELMNYDFTARMESGLDQVANDQAEWKTVLDEFFAEFSEQLETAEKDPEEGGMRPNQMVM
TSIDCPTCRRQMGIRTASTGVFLGCSGYALPPKERCKTTINLVPETEILNILEGDDAETN
ALRARRRCQKCGTAMDSYLIDTQRKLHVCGNNPACEGYEIETGEFRIKGYEGPIVECEKC
GSEMHLKLGRFGKYMGCTNDECKNTRKILRSGEVAPPKEDPVPLPELACEKSDAYFVLRD
GAAGVFLAANTFPKSRETRAPLVEELVRFKDRLPEKLCYLADAPVADPEGNKTLVRFSRK
TKQQYVSSEKEGKATGWTAFYIDGKWVETKK
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaagctctcgtaatagttgagtccccggcaaaagccaaaactattaataagtat
ttagggaatgactacgtggttaagtccagtgtcggtcacattcgtgatttaccgaccagt
ggttcagccagcaagaagagcgctaactcaaccgaagataaaaccaagcaagaagacaaa
cccaaaaagaaagttaaaaaggacgaaaaagttgcgctggtaaaccgaatgggcgttgat
ccctatcacggttggaaagctcaatatgaaattctgcccggcaaagagaaagtggttgct
gagcttaaagccctggccgagaatgctgaccacatctatctcgcaaccgaccttgaccgc
gaaggagaggctattgcctggcatttgcgggaagtcattggtggcgacgataagcgtttt
agccgagtcgtatttaacgaaattactaaaaacgccattcagcaagcttttaaccaaccg
ggtgaattaaatatcaaccgagttaacgcgcaacaggcccgtcgttttatggatcgggtt
gtgggttatatggtttccccgctgttatggaaaaaaattgcgcgcggtttatctgccgga
cgagtgcaatctgttgccgtgcgtttggtggttgagcgggaaaaagacattaaggcgttt
gttcctgaagaatactgggaattgcatgctgacctgctggcaaaaggtgaaattcctatt
cagatggaagtcacccatgcccacaataaaccgttcaaaccagttaatcgtgagcagacc
cacgctgcactgacgttgctggaaaacgcccgctaccaagtgctggatcgtgaagataaa
ccgaccagtagcaaaccgggtgcgcctttcatcacctcaaccttgcaacaggctgccagt
acccgcctgagtttcggcgtgaaaaaaaccatgatgatggcacaacgcctgtatgaagcg
gggcatatcacttatatgcgtaccgattccaccaatttaagtcaggatgcactgactatg
gtgcgtggttatattggtgataattttggcgataaatatttgccgccttcagccaatcag
tacagcagcaaagagaattcgcaagaagcgcatgaagccatccgtccatcggatgtcaat
gtgctggccgaacagttaaaagacatggaagcggatgcgcagaaactgtatcagttgatc
tggcgtcaattcgttgcctgtcaaatgacaccggcaaaatacgactccaccacactgacg
gtacaagctggcgattatcaattacgcgctaaaggccgcacattgcgttttgacggctgg
accaaagtgatgcctgcgctacgtaaaggtgatgaagatcgcaccttgccagtgattgaa
gtgggaagtgagctggatctgcaaaaactgatccccagccagcactttaccaagccgcct
gcgcgttatagcgaagcgtcactggttaaagaactggaaaaacgtggtattggccgtccg
tccacctatgcatcgattatttctactattcaggatcgtggttacgtcagagtagaaaac
cggcgtttctatgcggaaaaaatgggtgagatcgtcactgaccgtctggaagaaaacttc
cgtgagttgatgaattacgatttcaccgcccgtatggaaagtggtttggatcaggttgcc
aacgatcaggcagaatggaaaaccgtgctggatgagttctttgctgagttcagcgaacaa
cttgaaaccgccgaaaaagatcctgaagaaggcggtatgcgcccgaatcagatggtgatg
accagcattgattgcccaacctgtcgtcgccaaatggggatccgtaccgcaagcaccggg
gtcttccttgggtgctctggttatgcattgccaccgaaagaacgttgtaaaaccaccatc
aacctggtgccggaaacggaaattctcaacattctggaaggggatgatgcggaaaccaac
gcgctgcgtgcccgtcgtcgttgccagaagtgtggcactgcaatggacagttacctgatc
gatacgcaacgtaaattacatgtctgtggtaataaccccgcctgtgaaggttacgagatc
gaaaccggtgagttccgtatcaagggttacgaaggcccgatcgttgaatgtgaaaaatgt
ggttctgaaatgcacctgaaattggggcgtttcggtaaatacatgggatgcaccaacgac
gaatgtaaaaacacgcgcaagattttacgcagtggtgaagtggctccgccaaaagaagat
ccggttcctttgcctgaattggcatgcgaaaaatctgatgcctactttgtattacgtgat
ggtgcggctggcgtattccttgctgcgaacactttccctaaatcccgtgaaactcgcgcg
ccgttagtggaagagttggttcgtttcaaagatcgtctaccagagaaattgtgttatctg
gctgacgcgccagtagccgatccagaaggcaataaaaccttggttcgctttagccgtaaa
acgaaacagcaatatgtttcgtcagagaaagagggcaaagcaacaggttggacggctttc
tatatcgacggtaagtgggttgaaaccaaaaagtaa
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