Yersinia ruckeri YRB: BD65_3093
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Entry
BD65_3093 CDS
T03611
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
yru
Yersinia ruckeri YRB
Pathway
yru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BD65_3093
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yru03019
]
BD65_3093
Enzymes [BR:
yru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BD65_3093
Messenger RNA biogenesis [BR:
yru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BD65_3093
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HI1480
P-loop_SecA
Utp25_C
Cas3-like_C_2
HEM4
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AJI95437
LinkDB
All DBs
Position
3404619..3405806
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AA seq
395 aa
AA seq
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MPLLQILNENAQPIKGRRPVRALILTPTRELAAQIGENVEQYSKYLKLRSLVVFGGVSIN
PQMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAK
LPAKRQNLLFSATFSDEIKGLASKLLNNPASVEVARRNTASEQITQSVHFVDKNRKRELL
SQMIGSQNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKI
RVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCIDEHKL
LRDIERLLKREIPRFAIEGYEPDPSIKADPIQNGRQGRGASRPGMGRGSATRSSGSAGAG
RGDSRGNSSKPRSQGDGQRRSAPPSSRPRSRKPGE
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
ttgccgctgctgcaaatactcaacgaaaacgcgcaaccaatcaaaggccgtcgccctgta
cgtgccctgattttgacgccaacgcgtgaactggctgcacaaatcggcgaaaacgtcgaa
cagtacagcaagtatcttaaattacgttcgctggtggtcttcggtggtgtgagtatcaat
ccgcagatgatgaagttgcgcggaggtgtcgatattttggtcgcgactccgggtcgttta
ctggatctggaacatcagaacgcggtagatttatccaaaattgaaattctggtgctggat
gaagccgatcgcatgttggatatgggctttattcatgatattcgtcgagtgttggccaaa
ttgcctgccaaacgccagaatctgttgttctctgcgactttctcagatgaaatcaaagga
ttggctagtaagttgctgaataatccagcatcagtcgaagttgcacggcgcaacaccgct
tctgagcaaattacccaaagtgttcacttcgtggataaaaatcgcaaacgtgaattactg
tctcagatgattggcagccagaattggcagcaggtattggtatttactcggactaagcac
ggcgctaaccatctggcagaacaattgaataaagacggtatcactgccgccgctattcac
ggtaacaaaagccaaggtgctcgtactcgtgcgttggctgattttaaagacggtaaaatc
cgcgtgctggtagccacagatattgctgctcgtgggctggatatcgatcagttgccacat
gtggtcaactatgaattgcctaacgtgccggaagattacgttcaccgtatcggtcgtact
ggccgtgcagaacgcactggcgaagcgatttctctggtttgtatcgatgagcacaaatta
ctgcgtgatatcgaacgcttgttgaaacgtgaaattccgcgtttcgctatcgaaggctat
gagccagatccaagcatcaaagcagatccgatccaaaacgggcgtcaaggccgtggcgca
tctcgtccaggtatggggcgtggcagcgccacccgttcatcgggcagtgcaggtgctggt
cgtggtgatagccgtggtaatagcagcaaacctcgtagtcagggtgacggccagcgccgt
tcagcgccaccgtcatctcgcccacgtagccgtaaaccgggcgaataa
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