Yersinia ruckeri YRB: BD65_3260
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Entry
BD65_3260 CDS
T03611
Name
(GenBank) L,D-transpeptidase catalytic domain protein
KO
K21470
L,D-transpeptidase YcbB
Organism
yru
Yersinia ruckeri YRB
Brite
KEGG Orthology (KO) [BR:
yru00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
yru01002
]
BD65_3260
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
yru01011
]
BD65_3260
Peptidases and inhibitors [BR:
yru01002
]
Cysteine peptidases
Family C82
BD65_3260
Peptidoglycan biosynthesis and degradation proteins [BR:
yru01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
BD65_3260
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Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
AJI95633
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Position
3594843..3596705
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AA seq
620 aa
AA seq
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MSLEKMILLRPLALYCTLLCSLTPTFSASAVAPTLSIDSNLPVNSGSMSVVQSRSAILAT
LPKKVTPYYAANLAVLYASNHMQPMWQDRQAVLRFQQQLAEVAMSGIQPQFMQWVKWLSD
PEIKGMARDIVLSDAMLGYLHFVSGVSTNGNVWLYSNVPYKMAMPPTAILNRWQQAVREG
NTAAYMTALAPQHPQYEKMHQALKSMLADNRPWPQFTGAATLRPGQLSDDIPALREILDR
SGMLNAAPAAPVKSPEVIPMDNPVVAVVNDDLSVDEEKTRAQAHSLVVSPAAAPISEITT
SPQTLTTAHSGNKLSVTDNQYGEELVAAVKRFQQWQGLTDDGVIGPRTREWLNVSPQMRA
SLLALNIQRLRILPGQVTTGIMVNIPNYSLSYYLNGTEVLSSRVIVGRPSRKTPLMSSAL
NNVVVNPPWNVPISLIRQDIMPKARNDASYFQRHGYTVLSGWGNDAEAINPSMIDWSLIS
PNHFPYRLRQEPGASNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKAS
DLASMLLQDAGWNNERVSATLKQGNTTYVNIRQRIPVQLYYLTAWVAEDGKPQFRTDIYN
YDKTVRSGAQITPQAELLMQ
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctagaaaaaatgattttattacggccattagccctttattgcactttgctttgc
agcctgactccgactttcagcgcttctgcagtcgcgccgacgttatccattgattccaat
ctgcccgtcaattcaggcagcatgtcagttgtacagagtcgttctgcgattttggcgaca
ttacccaagaaagtgacgccttactatgctgctaacctggcggtgttgtatgcatccaat
catatgcagccgatgtggcaggatcgtcaagcggtactgcgttttcaacagcaattggct
gaagtggcgatgtcgggtattcaaccgcaatttatgcaatgggtaaaatggttgagcgac
ccagaaatcaaaggaatggctcgggatatcgtactctctgacgccatgctcggctattta
cactttgtttccggggtcagtaccaatggcaatgtttggctatatagcaatgtgccttac
aaaatggccatgccaccgacggcgatacttaatcgctggcagcaggcggttcgtgaaggc
aacactgcggcatatatgacagcgctagccccacaacatccgcagtatgaaaaaatgcat
caggcactgaaaagcatgttggcggacaatcgtccctggccccagtttaccggagcggcc
accttacgccctggtcagttaagtgatgatattccggcgttacgggaaatactggatcgt
agtggtatgttaaacgccgccccggctgcgccagtgaaatcgccggaagttattccgatg
gataatccggtcgttgcggtggtcaatgatgatttatctgttgatgaagagaagacccgt
gctcaggctcatagtctggtagtcagtccagcagcagcgccaattagcgaaatcacgacc
tcgccacaaacgctgactacagcacattctggcaataaacttagcgtgacggataatcaa
tatggtgaagaactggtggcggcggtcaaacgttttcagcagtggcaaggtttgaccgac
gacggagtgattggcccaagaacccgcgaatggttgaatgtttcgccgcaaatgcgagcc
agcctgttggcgctgaatattcaacgtttgcgtatcttgccgggacaggtaaccaccggg
attatggttaatattccgaattactcgctcagctattatctaaatggtactgaagtgctg
tcgtcacgcgtgattgttggcagaccgagccgcaaaactccgctgatgagcagcgcactg
aataatgtggtggttaatccgccatggaatgtgccgatctcgctgattcgtcaggatatc
atgccaaaagcgcgtaacgatgccagttacttccaacgtcacggttacaccgttttgtcc
ggttggggtaatgatgccgaagccatcaatccgtcgatgattgactggagcttgatttct
cccaatcacttcccctatcgtttgcggcaagaacccggtgcatccaactccctcgggcgt
tttaagttcaatatgcctagctccgatgctatctatctgcatgacacaccgaatcacgga
ctgttccagaaagatattcgggcattaagttcaggttgtgtgcgggtgaacaaggcatcg
gatttggccagcatgttgttgcaggatgccggttggaacaatgagcgggtatctgcgacg
ctaaaacaagggaataccacctatgtgaatatccgccaacgcattccggtgcagctttat
tacctgacggcgtgggtagcagaagacggtaagcctcagttccgtacagatatttacaat
tatgataaaacggtgagatctggcgcacaaattacgccacaggcggagcttttaatgcaa
taa
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