Yersinia ruckeri YRB: BD65_63
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Entry
BD65_63 CDS
T03611
Symbol
holB
Name
(GenBank) DNA polymerase III, delta' subunit
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
yru
Yersinia ruckeri YRB
Pathway
yru03030
DNA replication
yru03430
Mismatch repair
yru03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
yru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BD65_63 (holB)
03430 Mismatch repair
BD65_63 (holB)
03440 Homologous recombination
BD65_63 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yru03032
]
BD65_63 (holB)
03400 DNA repair and recombination proteins [BR:
yru03400
]
BD65_63 (holB)
Enzymes [BR:
yru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BD65_63 (holB)
DNA replication proteins [BR:
yru03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BD65_63 (holB)
DNA repair and recombination proteins [BR:
yru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BD65_63 (holB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNApol3-delta_C
DNA_pol3_delta2
HolB_lid
PDH_E1_N
DUF6587
Motif
Other DBs
NCBI-ProteinID:
AJI95123
UniProt:
A0A085UA39
LinkDB
All DBs
Position
67684..68691
Genome browser
AA seq
335 aa
AA seq
DB search
MNWYPWLNAPYRQLVGQHIAGRGHHALLVHALPGNGADALIYGLSRWLMCQQRQGEKSCG
ECHSCRLMLAGNHPDWHVLTPEKGKSSIGVERVRTLIETLYSHAQQGGAKVIWLPQAESL
TDAAANALLKTLEEPPEKTYFLLRCVEPSRLLPTLRSRCFYWHFSSPETALSMQWLGRQV
SAEPVAMLAALQLSEGGPIAAEQLLQPERWAQRTALCQALSEGLSRQDLMSLLPQLNHDN
VSERLHWLSSLLLDALKWQQGAGNFIVNQDQRQLVQQLAQSTPISALLQSANQWLHCRHQ
LSSVVGVNRELLLTEQLLNWENRLSGADRTFSHSL
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgaattggtatccgtggctgaatgcgccttaccgccagttggttgggcaacatattgcc
ggtcgtggtcatcacgccttactggtgcatgccttgcccggcaatggtgctgatgcgctg
atttatggcttgagtcgttggttgatgtgccagcagcgtcagggggagaaaagctgcggt
gaatgtcacagttgccgcctgatgttggctggcaatcatcctgattggcatgtgttgacg
ccggagaaaggcaaaagcagtatcggcgtcgagcgagtgcgaacccttattgagacactt
tattcccatgctcaacagggtggagccaaagtgatctggttaccacaagcagaatccctg
actgacgcagcggccaacgcgttgctaaaaacactggaagagccgccggaaaagacttac
ttcctattgcgatgcgttgaaccctcccgtttactaccgacgctgcgtagtcgatgcttt
tactggcacttttccagccctgaaactgcattgagcatgcagtggttggggcggcaagtc
agtgccgaaccggtggcgatgctggcggcgttacaactcagtgaaggcgggcctattgcc
gccgagcaattattacagccggaacgttgggcgcaacgtacggcattgtgtcaggctctt
agtgaaggattatcccggcaagatctgatgtctctgctgccacagctgaaccacgataac
gtcagtgaacgcctgcattggctatcctctttgctattagatgcgttgaaatggcagcag
ggggcgggtaactttatcgtgaaccaggatcagcggcaattggtgcaacagcttgcccag
tcaacgccgatttctgcactgcttcaatcggctaatcaatggctacattgtcgccatcaa
ttatcttctgtcgtcggcgttaaccgcgaattgttactgactgagcaattgctcaattgg
gaaaacagactgtccggtgctgatcgtaccttttctcattcgttgtaa
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