Yersinia similis: BF17_01420
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Entry
BF17_01420 CDS
T03057
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ysi
Yersinia similis
Pathway
ysi03030
DNA replication
ysi03430
Mismatch repair
ysi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ysi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BF17_01420 (dnaE)
03430 Mismatch repair
BF17_01420 (dnaE)
03440 Homologous recombination
BF17_01420 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ysi03032
]
BF17_01420 (dnaE)
03400 DNA repair and recombination proteins [BR:
ysi03400
]
BF17_01420 (dnaE)
Enzymes [BR:
ysi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BF17_01420 (dnaE)
DNA replication proteins [BR:
ysi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BF17_01420 (dnaE)
DNA repair and recombination proteins [BR:
ysi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BF17_01420 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AHK18168
UniProt:
A0ABN4CIQ1
LinkDB
All DBs
Position
complement(218503..221985)
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGA
GIKPIIGADFYVQSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAGPIIDRDW
LSKYKEGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQAHFPDSYYLELIRTGRPDEEN
YLHAAVALATERGLPVVATNDVRFIDESDFDAHEVRVAIHDGFTLVDPKRPKNYSPQQFM
RDEEQMCELFADIPEALINSVEIAKRCNATIRLGEYFLPQFPTGEMSTEDFLVEKAKQGL
EERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIEHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDPGMTLEKAFAAEPQ
LPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVTQ
FDKNDVEYAGLVKFDFLGLRTLTILNWALEMINARRAKTGLEPIDIASIPLEDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMGKKNPAEM
AKQRSVFEDGAKSQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKLIMSGAFDRLGPHRAALMS
SLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQEQVVLDGERETLGLY
LTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIAARVMVTKRGNRIGICTLD
DRSGRLEVMLFTDALEKYQHLLEKDRILIATGQVSFDDFSGGLKMTARELMDISEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRAGTIPVHLYYQREDARARLRFGATWRVTPTD
RLLIDLRTLVGNEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggccgaacctcgttttgtccacctgcgtgttcatagcgattactccatgatcgatgga
ttagctaagattggacctttggtgaaaagagccgctgcgttaggtatgcctgctctggct
attaccgattttactaacctctgtggcctggtgaaattctacggtagcgctcatggtgca
gggattaaacccatcatcggtgctgacttctacgtacaaagtgaaatactgggtgatgaa
ttagcccacctcacggttttggctcgcaataatgaaggctaccaaaatctgactttattg
atctcagaagcctaccaacgaggttatggcgctgcgggtcctatcattgatcgcgattgg
ctgagcaaatataaagaaggattaattctgctgtctggtggccgaatgggggatgtgggc
aaattcctgctacggggtaaccaggttcaggttgatcaatgtctcgccttttatcaggca
cactttccagacagttattatctcgaacttattcgtaccgggcgtccagacgaagagaac
tatcttcatgctgccgtggcattggccactgagcgcggtttgcctgttgttgcgaccaat
gatgtgcgttttattgatgagtcggattttgatgcccatgaagtccgtgttgctatccac
gacggttttacattggttgatcctaaacggccgaagaattacagcccacagcagtttatg
cgcgatgaagaacagatgtgtgagctgttcgctgatattccagaagcgttgatcaacagt
gttgagatagccaagcgctgtaatgccactatccgtcttggggaatatttcttaccgcaa
ttccccacgggggagatgagtacagaagattttctggtagaaaaagccaaacaaggtttg
gaagaacgtttggagtttctgtttccggaccctgaggttaggctgcaaaaacggccagaa
tatgatgaacggctggatatcgagctcaaagttattaaccaaatgggcttccctggttac
ttcctgattgttatggaatttatccagtggtcaaaagacaacggcgtaccggtggggcca
gggcgtggttctggcgcaggctcgttggtggcttacgctctgaaaattacggatattgac
ccactggagtttgatctactgttcgagcgcttcctgaacccggaacgtgtatcgatgcct
gacttcgacgttgacttctgtatggagaaacgtgatctggtgatcgaacacgtggcggaa
atgtatggccgcgatgctgtttcccagataattaccttcggtaccatggcggctaaagcg
gtcatccgcgatgtaggccgtgtattaggccatccctatggttttgtcgatcggatctca
aaattaatcccactcgatccggggatgacgctggaaaaagcatttgcggcagagccacag
ctacctgaaatttatgaagctgatgaagaggtcagggcgctaattgatatggcgcgtaag
ctggaaggggtaacgcgaaatgccggtaaacatgcaggtggtgtggttattgcccccacc
aaaattaccgattttgccccactctattgtgatgcggaaggtaataacccagtcacgcag
tttgataaaaatgatgtggaatatgctgggctggtgaagtttgacttcctcggtttgcgt
acactaaccattcttaactgggcgttggagatgattaacgcccggcgcgctaaaactgga
ttggagccaattgatatcgcctctattccgctggaggataaaaaaagcttcgatatgctg
caacgctcggaaacgacagcagtattccagctggaatccagagggatgaaagacttgatc
aagcgcctgaagcctgactgcttcgaggatatgatcgcattggtggcgttatttcgtccc
ggtccgttacaatcagggatggttgataactttattgaccgtaaacatggccgtgaagcg
atatcttacccagatattgagtggcaacatgaatccttgaaacctgtgcttgagccgacc
tacggcatcatcttgtatcaggaacaggtcatgcaaattgcgcaggttctgtctggctac
tcactgggtggtgcggacatgttgcgtcgtgccatgggtaagaaaaaccctgctgagatg
gctaagcagcgttctgtatttgaagatggtgcgaaaagtcagggtatcgatggtgagttg
gcgattaaaatctttgacctggttgagaaatttgcgggttatggttttaacaaatctcac
tcggcagcctatgcattagtctcctatcaaacgttgtggttaaaagcccattatccggct
gaatttatggctgcagtaatgactgctgatatggataatactgacaaagtggtcggcttg
gtcgatgaatgctggcgcatggggctgaagattctgccccctgacatcaacagcggttta
taccatttccatgtgaatgatgatggcgaaattgtttatggtattggtgccattaaaggg
gtaggtgaggggccgatagaagccattctggaggcgcgtaaagaggggggctactttaaa
gagttgtttgacctgtgcgcccgcgtcgataccaaaaagcttaacaagcgcattttagaa
aaacttatcatgtccggtgcatttgaccgtttggggccacaccgtgcagcattgatgagt
tctctgggggaagcgcttaaagccgcagatcaacatgctaaagccgaagcgattggtcag
gtagatatgtttggtgtattagccgacgcgcctgagcaggttgagcaatcctatgccaat
gtgccgccatggcaggagcaggttgttttagacggtgaacgggaaacactggggttgtat
ttaactggccatccgatcactcagtaccttaaggaaatcgaacgctatgccggtgggatg
cgtttgaaggatatgcatccaacggatcggggcaaaatgaccaccgcagtggggctggtg
atcgcggcaagggttatggtcacaaaacgtggtaatcgtattggtatttgtacgctagat
gaccgctctggtcgtctggaggtaatgttattcaccgatgcattggaaaaatatcagcat
ttattggaaaaagaccgtatcctgatagccaccggacaggtcagctttgatgactttagt
ggtgggcttaaaatgaccgcccgtgagttaatggacatcagtgaagctcgtgaaaaatat
gcccgtgggcttgctatatcgctgaccgacaggcaaattgatgaccagcttttgaaccgt
ctccgtcagtcgttggaaccccatcgagcggggacgatcccagtacatctttattaccaa
cgggaagatgctcgcgcccggctgcggtttggggccacatggcgcgtgacgcccaccgat
cgcttattaatcgatttgcgaacgttggtaggtaatgagcaagtggaactggaatttgac
taa
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