Yersinia similis: BF17_08820
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Entry
BF17_08820 CDS
T03057
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
ysi
Yersinia similis
Pathway
ysi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ysi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BF17_08820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ysi03019
]
BF17_08820
Enzymes [BR:
ysi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BF17_08820
Messenger RNA biogenesis [BR:
ysi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BF17_08820
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
CCDC138_C
Motif
Other DBs
NCBI-ProteinID:
AHK19401
UniProt:
A0A0T9Q0A3
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All DBs
Position
complement(1823798..1825084)
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AA seq
428 aa
AA seq
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MSKTHLTEQKFSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKT
LAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQVTGLKLGLAYG
GDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIR
WLFRRMPSVDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIKEELFYPSN
EEKMRLLQTLIEEEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILE
DFTKGDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLA
CEEYALNLPAIETYTGHSIPVSKYNSDALLTDLPAPKRLARTRTGNGPRRNSAPRRSGAP
RNNRKRPG
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttgactgaacagaagttttccgacttcgccctgcacccgctagtt
gttgaagcccttgaaaacaaagggtttcagtattgcacgccgattcaggcgttagcattg
ccactcaccctctctgggcgtgatgtagcaggtcaggcgcaaaccggtacaggcaagacg
ctggcattcttggcgtctactttccattatttgctttctcacccggcagaagagggtcgc
cagactaatcaaccacgcgcattaattatggcaccaacgcgcgaattagccgtgcaaatt
cactccgatgcagaatcactttcccaggtaaccgggctgaagttaggtctggcttatggt
ggggatggctacgacaaacagctcaaagtgctggaaagtggcgttgatatcttgatcggt
acaactggccgtttaatcgattacgcgaaacaaaattatattaacctcggtgcgattcaa
gtcgtggtattggatgaagctgatcgcatgtacgatctaggctttattaaagatatccgc
tggctgttccgccgtatgccttccgttgataaacgtttaaatatgctgttttctgccact
ctctcgtatcgagtacgtgaattggcattcgaacaaatgaataatgcagaatatgttgaa
gtggaaccgttacaaaaaaccggtcaccgcatcaaagaagagctgttctatccttcaaat
gaagaaaaaatgcgtctgttacagacgttaattgaagaagaatggcctgatcgctgtatt
atttttgctaataccaaacaccgttgtgaagagatctgggggcatttggctgctgatggc
caccgcgtcggtttactgacaggtgatgttgctcagaaaaaacgcctgcgtattctggaa
gatttcaccaaaggcgatttggatattctggttgccaccgatgttgctgcccgtggttta
cacatcccattagtgacccatgtcttcaactatgacctgccagatgactgtgaagattac
gttcaccgcattggccgtactggccgtgctggcgagagtggtcactccatcagtctggcc
tgtgaagagtatgcattaaacttgccagctattgagacctacacgggtcatagcatcccg
gtaagcaaatataacagtgatgcgctattaactgatctaccagcgcctaaacgcctggcc
cgtacccgtaccgggaatggcccacgccgtaattctgccccacgtcgcagtggagcacca
cggaataaccgtaagcgaccaggctga
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