Yersinia similis: BF17_08830
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Entry
BF17_08830 CDS
T03057
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ysi
Yersinia similis
Pathway
ysi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ysi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BF17_08830 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ysi03021
]
BF17_08830 (rho)
03019 Messenger RNA biogenesis [BR:
ysi03019
]
BF17_08830 (rho)
Transcription machinery [BR:
ysi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BF17_08830 (rho)
Messenger RNA biogenesis [BR:
ysi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BF17_08830 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AHK19403
UniProt:
A0A0T9Q017
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All DBs
Position
1826009..1827268
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AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSDLITLGENMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTVAGKIRPPKEGERYFALLKVNEVN
YDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIATSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDF
NRSGTRKEELLTTTDELQKMWILRRILHPMGEIDAMEFLISKLATAKTNDQFFDNMRRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggtttctgatctgataacacttggcgaaaat
atggggctggaaaacctggcccggatgcgtaaacaagatattattttctctattctaaag
cagcatgccaaaagtggagaagatatcttcggtgacggtgtattggagatattgcaggat
ggatttggttttctccgttctgcagacagctcctacctcgccggtcccgacgacatctat
gtatccccaagccaaattcgccgtttcaacctccgcactggtgataccgttgccggtaag
attcgtccgcctaaagaaggcgagcgttattttgcattgttgaaagttaatgaagttaac
tatgacaagccggaaaacgcccgtaataaaatcctattcgaaaacttaacaccgttacat
gccaactctcgtctgcgcatggaacgtggtaatggttcgactgaagatttaaccgcccgt
gtactggatttggcatcgccaatcggtcgtggccaacgtggtctgattgtggcaccaccg
aaagccggtaaaactatgctgttgcagaacatcgcgaccagcattgcttacaaccaccct
gattgtgttttgatggtattgctgattgacgagcgtccagaagaagtaaccgagatgcaa
cgtctggtcaaaggtgaagtcattgcttctacttttgatgaaccagcctcccgtcacgtt
caagtcgctgaaatggttatcgagaaagcaaaacgtctggttgagcataaaaaagacgtt
attatcttgttagactctattacccgtttagcccgtgcttacaacaccgtagtacctgct
tcaggcaaagtattgaccggtggtgttgatgcgaacgcgttacatcgtcctaaacgtttc
tttggtgccgcacgtaatgttgaagagggcggaagcctgaccatcattgcaaccgcgctg
gttgataccggttctaaaatggatgaagttatctacgaagaatttaaaggtaccggtaac
atggaattgcatctgtcccgtaaaattgcggagaaacgtgtattcccagccattgacttc
aaccgctctggtacccgtaaagaagagttgcttactacgactgatgagctacaaaaaatg
tggatcttgcgccgaattcttcatccaatgggtgaaattgatgcaatggaattcctcatc
agtaagctggcgactgcgaaaactaacgatcagttcttcgataatatgagacgctcgtaa
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